Oncorhynchus tshawytscha (Chinook salmon): 112216416
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Entry
112216416 CDS
T05605
Name
(RefSeq) RNA binding protein fox-1 homolog 2 isoform X1
KO
K14946
RNA binding protein fox-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112216416
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112216416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fox-1_C
RRM_1
RRM_8
Motif
Other DBs
NCBI-GeneID:
112216416
NCBI-ProteinID:
XP_024232151
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All DBs
Position
LG32:complement(16241636..16280234)
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AA seq
475 aa
AA seq
DB search
MLMSTDVTSIMLPVSRAIMDRDRELQDTMAGVHPNSTGASGAALRGMKRGDPASDAQTSA
ALVESAGAECKRPRIDASGVVAEVGQNNDPLTLGYHGYPTHSQGSQDAAGGQEGLVPPSF
SAFPPPPPPPPQNGLALEYGASLYAAGAIQGSVEAGQAGLNTPTSVPNSLTTHQSDVSSQ
IDTQLVGTGGVGGGSVGDDSEKGTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN
ERGSKGFGFVTFETSADAEKARAALHGTLVEGRKVEVNNATARVMTNKKMVTPYSNGGEG
LAALPYGLLNANSPTAGWKLSPMVGAMYSPELYTDFSGLSLSVPGFPYPAAAATAAATFR
GAHLRGRGRPVYSAVRAALPQQAIPTYPGVMYQEGFYGAADLYGGYAAYRYAQPTAVAGP
AGAAAAAAAAYSDGYGRVYTTDPYHAALNPATAAAYGVGAMATLYRGGYSRFAPY
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgttaatgtcgaccgacgtaacatcaatcatgctgcctgtatctcgggctatcatggac
cgggatcgagagctccaggacacaatggccggggtgcatcccaactcgaccggggcttct
ggcgcagctctccggggaatgaagcgaggagacccagcatctgacgcgcagacgtcggca
gctcttgtggaatcggccggggcagagtgcaagcgtccccggattgacgcatctggagta
gtcgcagaggtcggccagaacaatgaccccctgacccttggttaccatggatacccaacc
cacagtcagggctctcaggatgcagcaggtggtcaagagggtctcgtccccccatccttc
tccgccttcccccctcctccccctccacccccccagaacggcttggccctggagtacggg
gccagtctgtacgccgcaggggccatccaggggtcggtggaggccggacaggcaggcctt
aacaccccgacaagtgtcccaaacagcttaaccacccaccagtcagatgtgtcgtcacag
attgatacccagttggtgggtacaggaggtgttggcggggggtccgtaggggacgactca
gagaaggggaccccgaaacgcctccacgtctccaacattcccttccgcttcagagaccct
gacctccggcagatgtttgggcaatttggaaagatcctcgatgtagagatcatattcaac
gagagaggatcgaagggttttggctttgtgacgtttgagacgagcgcagacgctgagaag
gccagagctgctctccacggaactctggtggaaggacgcaaggttgaggtcaacaacgcc
acagccagggtgatgaccaataagaaaatggtcaccccatattctaatggaggagagggg
ctcgccgctctaccttatgggctattaaatgccaactcccctacagccgggtggaagttg
agtccaatggttggagccatgtacagtccagagctctatacagatttctctggcctgtct
ctctcagtccctggcttcccgtaccctgcggcggctgccacagcggcagcgacctttagg
ggcgcccacctccggggtcgtggccggccggtctacagtgctgtcagggcagccctaccc
cagcaagctatacctacatacccaggtgtgatgtatcaggaagggttttacggtgcagca
gacctctatggtggctatgctgcgtatcgctacgctcagccgactgcggtagctggtcct
gcaggagcagcggctgccgcagcagctgcctacagtgatggctacggacgggtgtacacg
acagacccttaccacgctgcactaaaccctgccacagctgcagcctatggtgtaggagct
atggccacactgtacaggggaggctacagtagatttgcgccctactaa
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