Oncorhynchus tshawytscha (Chinook salmon): 112218796
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Entry
112218796 CDS
T05605
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1 isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
112218796
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112218796
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
112218796
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
DUF2894
Motif
Other DBs
NCBI-GeneID:
112218796
NCBI-ProteinID:
XP_024235720
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Position
LG19:complement(41967283..41979087)
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AA seq
848 aa
AA seq
DB search
MPKQQQQNRDLELDRLVRQVPLQHHPPTRSPSLSSPNSTLELPNVPSYPRLPPISLSRQL
SGLFNPTFHIEDDPTSALPSVSSRLSVHPAVSVEDVDSGGEGGGGGGEHHPHHIPQILTL
QDSNFKTLTVPGVSKTSRQSKVAEKEKKLYSQSEEDEEEMEIAVRAWPSQSSILSGDDGL
KERPASSASQASYVVNERLQELVKMFKERTERAKEKLIDPDHSDDDSPTASPARAPTPPP
APPEEPKEEEIEEQQPKPRLCCKVMPPRWIRALLDYRFPASIDPFTNLVYVLWLFFVTLA
WNWNMWLIPVRWAFPYQTPSNIYLWLLTDYLCDLIYILDILVFQPRLQFVRSGDIVFDKK
DMRVNYMKTFRFKMDVISLVPLELFYFKTGINPLLRFPRLLKIMSFFEFNDRLEGILTKA
YVYRVIRTTTYLLYCLHCNACLYYWGSAYEGLGSTQWVYDGQGNSYIRCYYFAVKTLITI
GGLPDPTTLFEIIFQLINYFVGVFAFSIMIGQMRDVVGAATAGQTYYRACMDNTVKYMAS
YRIPKDVQNRVKTWYNYTWQSQGMLDEQELLVQLPDKMRLDIAVDVNYDIVSKVSLFQGC
DRQMIFDMLKRLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPDGKTVFVTLRAGS
VFGEISLLAVGGGNRRTANVVAHGFANLFILDKKDLNEILVHYPESQKLLRKKARKMLTK
DKKPPKEPAQVIPPRTVTPKLFKAALDVAHQKTGLKGTLAKIKEKINKSSVSLQPSMSSS
LPPLSPVSPVSSLDPERKADAMSPTLDSSTLLCPVSHCHGDETLSKEQGQVEGEVAGESG
KKKEKRKA
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagcagcagcagcaaaaccgggacctggagttggaccgcctggtccgccaggtc
cctctccaacaccaccctccgactcgcagcccctcactgtcctcccccaacagtacccta
gagctgcccaacgtgccctcctacccccgcctgccacccattagcctgtccaggcagctg
tcagggcttttcaaccccaccttccacatcgaggacgaccccacgtccgctctaccctca
gtgagctccaggctcagtgtgcacccagctgtcagtgtggaggatgtggattccggcgga
gagggaggagggggcggaggggagcaccacccccaccacattccccaaatccttacccta
caggactccaacttcaagaccctgaccgtacccggagtgtccaaaaccagccgtcagagt
aaagttgctgaaaaagaaaaaaagttgtactctcagagtgaggaggatgaagaggagatg
gagatcgcagtgagggcatggcctagccagtccagcatcctcagtggagacgatgggcta
aaggagcgccctgcgtcttccgctagccaggccagctacgtggtgaatgagcgcctacag
gagctggtcaagatgtttaaggagaggacagaaagggccaaagagaaactcatagaccca
gatcactctgatgatgacagtccaactgcctcccctgcgagagctccaacaccacctcct
gcacctccagaggagccgaaggaggaggagatagaggagcagcaacccaagcctagatta
tgctgcaaggtgatgcctcctcgctggatcagagctctgctggactaccgcttccccgct
agcatcgaccccttcaccaatctggtctatgtgctgtggctgtttttcgtcaccttggcg
tggaactggaacatgtggcttatcccggtgcgctgggccttcccctaccagacccccagt
aacatctacctgtggctactcactgactatctgtgtgacctcatctacatcctggacatc
ctggtcttccagccccgcctgcagtttgtccgcagtggagacatagtgtttgacaaaaag
gacatgagagtgaattacatgaaaaccttccggttcaagatggatgtcatcagtcttgtt
ccactggagttgttctattttaaaactgggatcaacccactcctccgcttcccacgacta
ctaaagataatgtctttctttgagttcaacgaccgtcttgagggcatccttaccaaagcc
tacgtttacagagtgatccggaccaccacctacctgctgtactgcctgcactgtaatgcc
tgtctgtactactggggctctgcgtatgaaggtctgggctccacgcagtgggtctatgac
ggacagggcaacagttacatccgctgctactactttgctgtgaagaccctaatcaccatt
ggtggactgccggaccccacaacgctctttgaaatcatctttcagctcataaactacttt
gttggagtgtttgccttttccatcatgattggacagatgagagatgtggttggtgcagcc
acagcaggacagacgtactacagagcatgcatggacaacactgtcaaatacatggcctcc
taccgtatccctaaagacgtgcagaaccgggttaaaacctggtacaactacacctggcag
tcccagggcatgctggatgaacaggagcttctggttcagctcccagacaagatgaggctg
gacatcgctgtggatgtcaactatgacattgtcagtaaagtgtctctcttccagggttgc
gatagacagatgatctttgacatgctgaagagactgaggtctgttgtttacctcccaggg
gactatgtctgcaaaaagggtgaagttgggcgggaaatgtacatcatcaaagccggagag
gtgcaggtggtgggcgggccagatgggaagactgtgtttgtcacactgagggcgggatca
gtgtttggggaaatcagcttgctggcagttggtggagggaacaggaggacagcaaacgtg
gtggctcatggcttcgccaacctgttcatcctggacaagaaggacctcaatgagattcta
gtgcattaccccgagtcccagaagctgctccgcaagaaggccaggaagatgctcacgaaa
gataagaagcctccgaaggagccggcccaggtgatccctcctcgaacagtcacacccaag
ctattcaaagctgctctggatgtggcgcatcagaaaacaggcctcaaagggaccctcgcc
aagattaaggagaagatcaacaaatccagcgtttctctacagccctccatgtcctcctcc
ctgcctcccttgtccccagtctctccagtctccagtctggacccagagcgcaaggctgac
gccatgtcaccaaccttagacagctccacgctgctctgccccgtctcccattgtcacgga
gatgagacactctccaaggagcagggccaagtggagggagaagttgcaggagagagtggg
aagaagaaagaaaagagaaaggcatga
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