Oncorhynchus tshawytscha (Chinook salmon): 112220351
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Entry
112220351 CDS
T05605
Name
(RefSeq) contactin-3
KO
K06761
contactin 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112220351
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Contactins
112220351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_5
Ig_C17orf99
C2-set_2
Pur_ac_phosph_N
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
112220351
NCBI-ProteinID:
XP_024237963
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All DBs
Position
LG02:17981048..18072730
Genome browser
AA seq
1031 aa
AA seq
DB search
MMLLWKRLLLLSIIGCLAAHAQDVLFQGPRWRTEPSDLILPNNSPDQEATITCEAEGKPS
PQYRWSLNGTLIDLGSDYRRHMSGGNLIINSLDRDQDTGIYQCTAFNTWGIILSCRATLQ
FAYLDNFKTQTARSAVNVREGQGVVLLCGPPMHSGELTFAWIFNEYPYFVQQDSRRFISQ
ETGSLYIAKVEPSDVGNYTCVVNNSITKGKVLSSPTPLVLRNDGAMGEYEPKIEVNFPDT
VPAAKGSTVKLECFALGNPVPEISWRRTSGVPFPSKVKMKNSNAVLEIPHFQQEDTGMYE
CVAENSRGKNAARGRIAFQAKPHWLQTMIDGALSIEENLFWECKANGKPKPSYSWLRNGD
NLMAEGRVQIENGALSIAALNLSDAGMYQCVAENKHGIIYSSAELMVLASPPSFSKNPLK
PLLKARSGSEVVLECKPQASPRAISLWKKSNEIVQKNERITLLANGTLKIVNATRRDAGS
YTCIAKNQFGTASATGRLLITEPTRITQRPANMEIIVGESIVLPCQIASDPALDVSFSWE
FNGQLIDFHGDADHFDRVGGSISGDLMIRNIQLNHGGKYVCVIDTDVESLSASAILVVKG
PPGPPDTVAVEEITDSTAQLSWSPGRDNGSPITGYIVQARTPFTVGWQAVDTVPEVINGN
TLTATVVGLNAWVEYEFRVVARNSVGMGEPSPASAKTRTEDTMPDTAPTDVGGGGGTKSE
LVITWEPVPEELQNGEGFGYIIAFRPLGAITWTRVVISMPGVARYIFRNDTIPPFSPFDV
KVGAYNNRGEGPFSSIATVFSAEEVPSEAPKRVWGRSVSAATVEVIWEALPVTPERVLGY
EVVYWEDDTKPDTVGKVRTSGNYSAVNVTGLSANTQYYLAVCAFNTAGTGPQSTHINATT
KKPAPGQPPLNVEWTMIGSLLTLHWGPVIAMETEAEVIGYLVLLRRHRYNDVNSIITNKT
RMELTLSPNDNYLIQIKALSEGGEGVGSEPIHIHKLSMSARGSGASSLNPLSLSHLSAFL
ISAFLLLNSSW
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgatgttactatggaaacgacttctgctgctatcaatcattggttgccttgccgctcat
gcacaagatgtcctgttccaagggccaagatggagaacagagcccagtgacctcattctc
cccaacaactcccctgaccaggaagccaccattacatgtgaggcagaggggaaaccctcc
ccacaatacagatggtcgcttaacggaacactcattgatctggggagtgactaccggcgt
cacatgtctggaggcaacctgatcattaacagtctggacagggaccaagacacagggata
taccagtgcactgccttcaacacatgggggatcatcctcagctgccgagccactctacaa
tttgcatacctagataacttcaagacccaaactgcacggagtgctgttaatgtccgagag
ggccaaggagtggttttgttatgtggaccacccatgcattctggagagctgacgtttgca
tggatcttcaatgagtacccatactttgtccagcaagatagtcgtcgattcatctcccag
gagacaggaagtctgtacatcgctaaagtggagccttctgatgtgggcaactacacctgt
gtggtcaacaatagcatcactaagggcaaagtcctcagctctcctacaccactggtcctg
aggaatgacggagcaatgggtgaatacgaaccgaaaattgaagttaatttccctgacact
gttccagctgcgaagggatccacggtaaaactagaatgcttcgcactgggaaacccagtc
ccagaaataagttggaggagaaccagcggtgtcccatttcccagtaaggtgaagatgaag
aactccaacgctgttcttgaaattccacatttccagcaggaagacacagggatgtatgag
tgcgtggcagaaaatagccggggaaaaaacgctgcacgaggtcgtatcgccttccaggca
aaaccccattggctgcaaacaatgatcgacggggccctgtccattgaggagaacctgttc
tgggagtgtaaggcaaacggaaaacccaagccctcctacagttggctgaggaatggagac
aacctaatggcagagggccgggtgcaaatcgaaaacggggctctctccatagcagcatta
aacctgtcagacgccggaatgtatcagtgtgtggctgaaaacaaacatggcattatttat
tccagcgctgagctaatggtgttagcatcacctcccagtttctccaagaatccactgaag
cccctgctgaaagctcgctctggcagtgaagtggttctggagtgcaagccccaagcctcg
ccccgggcaattagcctgtggaagaaaagcaatgagatcgtgcagaaaaacgagaggatt
actctgcttgccaacgggacactgaagattgtcaacgcaaccagaagggatgcggggagc
tacacatgcatcgctaaaaatcagtttgggactgcaagcgccaccggaagactccttatc
acagagcccaccaggatcacccagaggcctgctaacatggagatcattgttggcgagagt
atcgtgctgccctgccagatagccagcgatccagccttggatgtgtctttctcctgggaa
ttcaacgggcagctcatagacttccacggggatgccgaccatttcgacagagtaggaggg
agcatttcaggagatctgatgattcgtaacatccagctgaatcacggggggaaatatgtc
tgtgttatcgacaccgacgtagagagcttgtccgcttcggccatcttggttgtgaaaggt
ccccccgggcccccggacacagtagcagtggaggagatcacagatagcacggcccagctc
tcttggagccccggcagggacaacggcagccctatcaccggctacatcgtccaggcccgg
acccccttcactgtgggctggcaggctgtggacacagttcctgaggtgatcaatggcaac
acactgacagccactgtggtgggcctgaatgcctgggtggagtatgagttcagggtggtg
gcccgcaacagtgtgggcatgggagagcccagtccagcctcagccaagaccaggacagag
gataccatgcctgatacagctcccactgatgttggaggcggaggaggcacaaaatctgaa
ttagtgataacttgggagcccgtgcctgaggaactgcagaatggagagggcttcggttac
atcatcgccttccggccgctgggtgccatcacctggacacgagtggtcatctccatgccc
ggggtggcccgatacatcttccgcaatgacaccatcccgcctttctcgccgttcgatgtg
aaggttggggcgtacaacaaccgtggggaaggccccttcagttccatagccacagtgttc
tcagcagaggaagtccccagtgaggctcctaagagggtttggggcaggagtgtatctgca
gctacagttgaagtgatttgggaagccctccccgtcacccctgaaagagtgctgggttat
gaggtggtgtactgggaagatgacaccaagcctgacacagtaggcaaagtcagaacctct
ggaaactactcagcggttaatgtgactggactgagcgctaacacacagtattatctagct
gtgtgcgcctttaacactgcagggacagggccacagtctacacacatcaacgccaccacc
aagaagccagcaccaggccagcctcctttgaatgtagagtggaccatgattggctctctg
ctcactctacactggggtcctgtgatagccatggagacagaggcagaggtcatcggatat
cttgtgctgttgagaagacaccggtacaatgatgtaaacagcatcataacaaacaaaacc
aggatggagctgacgctgtctcccaacgacaactacctgatccagatcaaggccctgagt
gagggtggtgaaggtgtaggcagcgaacccatccacatccacaaattaagcatgagcgca
cgaggttcgggagcatctagtctcaatccgctatcgctgtctcatctctccgcattcctc
atcagcgctttcctcctcctcaactcctcctggtga
DBGET
integrated database retrieval system
