Oncorhynchus tshawytscha (Chinook salmon): 112226776
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Entry
112226776 CDS
T05605
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112226776 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
112226776 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112226776 (thoc1)
03041 Spliceosome [BR:
otw03041
]
112226776 (thoc1)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
112226776 (thoc1)
Spliceosome [BR:
otw03041
]
Complex C
Other components
EJC/TREX
112226776 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112226776 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
Motif
Other DBs
NCBI-GeneID:
112226776
NCBI-ProteinID:
XP_024247091
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All DBs
Position
LG28:complement(13638841..13646575)
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AA seq
657 aa
AA seq
DB search
MSPPILFNFNDAKDTFTAATRSALDNKTSKPLINAFNQITGNETEKKTTLDQALRQVLEE
QIVEKKALVDDFLSLIYLSIDGVTEGICSATTPFLLLGDILDCLPLDQCDKIFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGQRPTEEKEDGMEVEEGEMGDEEPGAPAPCSIPIDYNLYRKF
WTLQDYFRNPVQCYEKFSWITFLKYSDETLAVFKSFKLDDMQASKRKLEELRTAGGDHVY
FAKFLTSEKLMDLQLSDSNFRRHILLQYLVLFQYLKGQVKFKSSSCILNDDQCLWMEETT
KLVYQLLKEIPPDGDKFATMVEHVLNTEENWNSWKNEGCPSFVKDRPVDDKPKRPTRKRQ
APEDFLGKGPDRKVFMGNDELTRLWNLNHDNMAACQSESREFMPSLEDFFEEAIEQADPA
NMVENEYKVVHNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLESMVIKLAKELPKDL
PSEEIKTGEEDDEDNSDTLLKESNDSPSMQNKLVSNQQMDEIAAKLGAQWKTLAGQLEIK
AAEIREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFPKIADILNET
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgatcttattcaacttcaacgatgcaaaagatacatttactgccgcaacc
agaagtgcgttggacaacaaaaccagcaaacctttgataaacgcattcaaccagatcact
ggaaatgagacagagaagaagaccacccttgaccaagctctaaggcaggtcctggaggag
cagattgtggaaaagaaagcacttgtcgatgacttcctgtctctcatctatctcagcatt
gatggagtcactgaaggtatctgctccgccactacccctttcctacttttgggagatatt
ctggactgtctacctcttgaccagtgtgataagatcttctcctttgttgaagagaatgtc
tccacctggaagtctaactccttctacactgctgggaagaactacctgttaaggatgtgt
aatgatcttttgaggaggttgtccaagtctcagaacacagtcttctgtgggcggatccag
ctgttcctggctcgtctcttccccctgtcggagaaatcaggtctgaacttgcagagccag
tttaatctcgacaacatcacagtgttcaacaaaaacgagcaggaaagcactctcggtcaa
aggcccacagaggaaaaagaggatgggatggaggtggaggagggggagatgggagatgag
gaacctggtgcacctgcaccttgttccatccccatcgactacaacctatacaggaagttc
tggaccctgcaggactactttagaaaccctgttcagtgttacgaaaagttctcctggatt
actttcctcaagtattcagatgagacgttggcggtgtttaagagcttcaagctggacgac
atgcaggcttcgaagaggaagctggaggagctgaggacagcgggaggagaccacgtctac
ttcgccaagttcctcaccagcgagaagctaatggacctgcagctcagtgacagtaacttc
cgacgacacatcctcctgcagtaccttgtcctgttccagtacctcaagggacaggtcaag
ttcaaaagctccagttgtatcctgaatgatgaccagtgtttgtggatggaggagaccacc
aaactggtgtaccagcttctcaaagagatcccacctgatggagacaagtttgccaccatg
gtcgagcatgtcttaaacacagaggagaactggaactcgtggaagaatgagggatgtccg
agctttgtgaaggaccgaccagtagatgacaaacccaagagacccacgaggaaaagacaa
gctccagaagatttcctgggtaaaggccctgacaggaaggtcttcatggggaatgatgaa
ctcacgagactttggaatctgaaccacgacaatatggcggcttgtcagtccgagagcagg
gagtttatgccttctctggaagatttctttgaagaggccattgaacaggcagacccagcc
aacatggtggaaaatgaatacaaggtggttcataactctaactatggatggcgagccctg
cgtctgctgtccaggaggagtcctcacttcttccagcctactaaccagcagttcaagagc
ctggccgactacctagagagcatggtcatcaaactggccaaggagctgccgaaggacctt
ccgtctgaggagataaagaccggggaggaagacgatgaagacaacagtgacaccctactc
aaggagagcaacgacagtccgagcatgcagaacaagctggtgtccaaccagcagatggat
gagatagcagccaagctgggtgcccagtggaagaccctggctggccagctggagataaag
gctgcagagatccgggagattgagacagacagcgaggatgtggacatgcaggccaagctg
ctgctggtggcctggcaggaccgcgaggggacacaggccaccgttgagagccttgttaca
gccctcaacgctgctggcttccccaagatcgcagacatcctcaatgagacatag
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integrated database retrieval system
