Oncorhynchus tshawytscha (Chinook salmon): 112236506
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Entry
112236506 CDS
T05605
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03030
DNA replication
otw03410
Base excision repair
otw03420
Nucleotide excision repair
otw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112236506 (lig1)
03410 Base excision repair
112236506 (lig1)
03420 Nucleotide excision repair
112236506 (lig1)
03430 Mismatch repair
112236506 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112236506 (lig1)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112236506 (lig1)
Enzymes [BR:
otw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112236506 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
112236506 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
112236506 (lig1)
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
112236506 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
112236506 (lig1)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
112236506 (lig1)
NER (nucleotide excision repair)
Other NER factors
112236506 (lig1)
MMR (mismatch excision repair)
Other MMR factors
112236506 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
112236506
NCBI-ProteinID:
XP_042185533
LinkDB
All DBs
Position
LG10:74548486..74574829
Genome browser
AA seq
1077 aa
AA seq
DB search
MQRSISSFFQPKTGKEKESKKSDGPGKDEPVKDKPEPIKRPLKVQNGVHEEPDSPVKKFT
KRSRQILDSDDEAPAGIEQEPEDKAVQPKDEVFKAVTNPLSPASPVTSSASPTPGTPDTP
TSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGQQNKRAKVEETQDSTENEEEAMD
VGGENSVDKPEVAQNNPEEKETDEEKTKDGEKEKALDVKVTATEEEKGKSEKAKERSPTE
RSQKVKERSPKERSQKVKERSPKERSQKVKERSPKGQKVKERSPKERSPKERSPKGHKAV
KVGKDMKEEKVSESPQAKKAPTISSFFAPRKAAVKMERPEKSEGKEKSEGEGKEKSEGKE
KSEGEGKEKSEGKKEKSEGKEKSEGGGKEKSEGEEKSEGYIKEEATGSRTTEDVKDKKGE
KTAQAQYDPSRPNYHPVDHACWSRGQRVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSV
IILSPEDLLCCVYLCLNQLGPAYMGLELGVGETVLMKAVAQATGRQLDKIKAEAAEKGDL
GLVAESSRNNQRIMFQPANLIAGGVFNKLKDIGNMSGNSAMNKKIDIIKGLFVACRFSEA
RYIVRSLAGKLRIGLAEQSVLSALSQAVCLSPPGQDFPPAVIDAGKGMSAEKQKAWIEEK
SLLLKQTYCEMPNYDVIIPVILKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFD
EAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTTKYPDIISRIHTVKNESVISCVLD
TEAVAWDREKKQIQPFQVLITRKRKDVAAADIKVQVCVYAFDLLYLNGESLVKQPLSCRR
ALLKKSFQEKEGEFVFARAIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRS
HNWLKLKKDYLDGVGDTMDLCVIGAYLGKGKRAGTYGGFLLACYDEDNEEFQSVCKIGTG
FKDEDLEQHYKFLKEHILPKPRPYYRVDQSTEPDLWLDAVQVWEVKCADLSLSPIYKAGM
GLCDPEKGISLRFPRFLRIRDDKKPEEATSGGQIADLYRKQQVVQKQGDKADLEDYY
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
aaaagtgatggaccggggaaagacgagccggtgaaagacaagccagaaccaatcaaaagg
cctctcaaagttcagaatggtgtccatgaggagcctgattcgcccgtgaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgaggctccagccggaatagaacaggag
ccagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttaccaaccccctg
tcccccgcctctccagtgacctcatccgcctcccccacccctggaacccctgacaccccc
acttccatctcaccctcgggaatacccaaacgccgcaccgcaaggaagcagttccccaag
agaaagctggacagcaggagtggcagtgaaaaggaggaggaagaacaaggacagcagaat
aaaagggcaaaggttgaggagacgcaggacagcaccgagaatgaagaggaagcgatggac
gtgggaggagagaacagtgtggataagcctgaggtggcgcagaacaacccggaggagaaa
gagactgatgaagagaagaccaaagatggagagaaggagaaagcacttgatgtgaaagtg
accgcgaccgaggaggaaaaaggaaaaagtgaaaaggctaaagagagaagtcctacagag
agaagtcaaaaggttaaagagagaagtcctaaagagagaagtcaaaaggttaaagagaga
agtcctaaagagagaagtcaaaaggttaaagagagaagtcctaagggtcaaaaggttaaa
gagagaagtcctaaagagagaagtcctaaagagagaagtcctaagggtcacaaggcggta
aaggttgggaaagacatgaaagaagagaaggtgtcagaaagcccccaagccaaaaaagcc
cccaccatcagcagtttctttgctcccaggaaggctgctgtaaagatggagagaccagag
aagagcgagggaaaggagaagagtgagggagagggaaaggagaagagcgagggaaaggag
aagagtgagggagagggaaaggagaagagtgagggaaagaaggagaagagcgagggaaag
gagaagagcgagggagggggaaaggagaagagcgagggagaggagaagagtgagggttat
ataaaggaagaggctactggttcccgtaccacggaggacgttaaagacaagaaaggagag
aagactgcccaggcccagtatgacccgtccagacccaactaccaccctgtagaccacgcc
tgctggagccggggacagagggtcccgtatttggctgttgcacgcacctttgaaaagatt
gaggaagattctggcagattgaggaacattgaaacattatcaaatctcctacgctctgtt
atcatcctctctccagaggacctgctgtgctgcgtctacctgtgtctcaatcagctgggt
cctgcttacatggggctggagctgggagtgggagaaactgttctgatgaaggctgtcgcc
caagctactgggcgacagttggacaaaatcaaggcggaggctgcagagaagggggacttg
gggttggtggctgagagttcccgtaacaaccagagaattatgttccagccagccaatcta
attgcagggggtgtgttcaacaaactgaaagacatcgggaacatgagtgggaattctgcc
atgaataagaagattgacatcatcaaaggtctctttgtagcctgtcgtttctctgaggcc
agatacattgtcaggtcgctggcagggaagctgaggattggcttggctgaacagagtgta
ctgtctgccctgagtcaggccgtgtgtctgtctcctccaggacaagacttccctccggcg
gtgattgacgcagggaaaggaatgagtgcagaaaaacagaaagcttggatagaagagaag
agccttctcctcaaacagacttactgtgagatgcccaactatgatgtcatcatcccagtc
attctgaaggaggggattgatgaactccccaaccactgcaaactcactccaggtgtacca
ttgaggcccatgctggctcaccccaccaaaggtgtaggagaggtgatgaagagatttgat
gaagccgccttcacctgcgagtacaagtatgatggagaacgagcacagatccatatcttg
gagaacggggaagtgcgtattttcagtcgtaaccaggaggataataccaccaaatatcct
gacatcatctctcgcattcatacggtaaagaatgagtctgtgatatcctgtgtgttggac
actgaggcagtagcttgggacagagagaagaaacagatccaaccattccaggttctcatc
acacggaagagaaaggacgtggctgcagctgatatcaaggtccaagtgtgtgtttacgcc
tttgacctgctgtatctcaatggagagtctctagtgaagcagcccttgtcatgtcgcagg
gctctgttgaagaagagcttccaggagaaggagggagagtttgtgttcgcccgcgccatc
gactcagacaacacagacgccatagctgagttcctggagcaatcggttcgagactcctgt
gagggactcatggtgaagactctggagaaagatgccacgtatgaaatcgccaagcgctct
cacaactggctcaagctgaagaaggattatctggatggcgtgggggacacgatggatctg
tgtgtgatcggagcgtatctggggaagggcaagagagcagggacctacggaggctttctg
ctcgcctgctacgatgaggacaatgaagagttccagtccgtctgcaagattgggacaggt
ttcaaggatgaagatttggagcaacattacaaattcttaaaggagcatattttgccaaag
ccccgcccctattaccgtgtggaccaatcaactgagcccgacttgtggctcgatgccgtg
caagtatgggaagtgaagtgtgccgacctatcgctgtcgccgatctacaaggctggcatg
ggattgtgtgacccagagaagggcatctctcttcggttcccacgcttcctgaggatcaga
gatgataagaagccggaggaggccacttcaggaggacagattgctgatttatacaggaag
cagcaggttgttcagaaacagggtgacaaagctgacctcgaggactactactga
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