Oncorhynchus tshawytscha (Chinook salmon): 112236709
Help
Entry
112236709 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112236709
04121 Ubiquitin system [BR:
otw04121
]
112236709
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112236709
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112236709
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112236709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
DUF5128
Filamin
zf-B_box
SGL
zf-RING_5
zf-RING_UBOX
zf-C3HC4
zf-RING_2
CEBP_ZZ
Motif
Other DBs
NCBI-GeneID:
112236709
NCBI-ProteinID:
XP_042166323
LinkDB
All DBs
Position
LG31:complement(31341589..31382683)
Genome browser
AA seq
824 aa
AA seq
DB search
MASFSDSDLQTCLLCKELCGSSSATISCNSSTSSSSSHSSSSSSRRLHVLPCLHTFCRQC
LEGQRSPGDPLKLSCPTCNQKVSISEVGVDSLPSSNFLLSNLLDAEQLQLGQNKNGHRGV
GGCSVPRFHRAHSVLHPNRLGGPQCSSCGEGNPASFHCLDCQEYLCDNCVRAHQRVRLTK
DHFMESLQHASQGLASPIAGRGRGVGGVGLSLTQPFQSNSSLLPLFQDRMSFCQHHDNKV
VLFFCETCSVPICRECSVGRHMGHSLVYLQDAVQDSRDIIIQLLADAQQGRQAVQLSMEK
IQAIAEQVDIKAKVVQTEVKNVVLRHLKALEDRESQLLWKVEKIQQLKAKSLYLQVEKLH
QNLTKLDSTITAVTQVLDEGCHLDVLLARERMLTQIQELKSLRGLLQPQEDDRLMFTPPD
QALYIAIQSMGLISSGAFAPVTKAHGEGLKTALRGKTASFTVIGYDHDREPCLSGGDAVS
AVVMAAADGNLSAAEVCDNQNGSYAVSYLPKTEGEDLVSVLVCNQHIMGSPFKVLVKSGR
RYGALGSPVSAFGSEGEGDGQLCRPWGISVDKEGYVVVADRSNNRVQIFKPCGAFHHKFG
SLGSRPGQFDRPAGVACDSQQQIIVTDKDNHRVQVFTFDGQFMLKFGEKGTKNGQFNYPW
DVAVNSAGKILVSDTRNHRVQLFGPDGSFINKYGFEGTLWKHFDSPRGVAFNHEDHLVVT
DFNNHRLLVIRPDCQSARFLGSEGTGNGKFLRPQGIAVDQENRIIVADSRNHRVQVFEPN
GNFLCKFGTHGSGFGQMDRPSGVAVTPDGVILVVDFGNNRILKF
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattctcagactccgacctgcagacctgtcttctctgcaaggagctctgtggc
tcctcctccgctaccatctcttgcaactcctccacttcctcttcctcctctcactcgtcg
tcctcctcctcccggcgcctccatgtcctcccctgcctgcacaccttctgcagacagtgt
ctggagggtcagcgcagccctggggaccctctcaaactcagctgccccacctgcaaccag
aaggtctccatctccgaggtcggagtggactctctcccttcctccaacttcctcttgagt
aaccttctggacgcggagcagctccaactcggccaaaataagaacgggcaccggggggtc
ggcgggtgctccgtacccaggttccaccgcgcccacagcgtgctccacccgaaccgtctg
ggagggccccagtgcagctcctgtggcgaggggaacccggccagcttccactgcctggac
tgccaggagtacctttgtgataactgcgtccgagcccatcagagggtccggttgaccaag
gaccacttcatggagagcctgcagcatgcaagccaaggcttggccagccccatcgcaggt
agaggcaggggggttggtggtgtagggttgtccctgacccagcccttccagtccaactcc
tccctgctgcctttgttccaggataggatgagcttctgtcagcaccatgacaacaaggta
gttctgtttttctgtgagacgtgctctgtgcctatctgtagggagtgtagtgtgggcaga
cacatgggccacagcttggtctatctacaggacgctgtccaggactccagagacatcatc
atccagctactggccgacgcacagcaaggaagacaggctgtacagttgagtatggagaag
atccaggccatagcagagcaggtagacatcaaggccaaggtggtccagacagaggtgaag
aacgtggtcctcagacacctgaaagccttggaggacagagagagtcagctactctggaag
gttgagaagatccaacagctgaaagccaagtccctgtacctgcaggtagagaagctgcat
cagaacctgaccaagctggacagcaccatcacagcagtcactcaggtgctggatgagggt
tgtcacctggacgtgctgctggccagagagcgcatgctgacccagatccaggagctgaag
tctctcagaggcctgctgcagccacaggaggatgatcgtttaatgttcacccctccagac
caggccctgtacatagccatccagtccatggggttgatcagtagcggagcgttcgctccc
gtcaccaaagctcacggtgaaggcctaaagaccgcactccgtggcaagaccgcctccttc
accgtaattggctacgaccacgacagggagccctgcctctcgggcggtgacgcagtgtca
gcggtggtgatggcagcggcggatggtaacctgtcggctgcggaggtgtgtgacaaccag
aacgggtcgtacgcggtcagctacttgcccaagactgagggagaagatttggtgtcagtt
ctggtctgtaaccagcacatcatgggcagccccttcaaggtactggtgaagtctgggcga
cgctacggggctctgggttcaccggtgtctgcgtttggcagtgagggggagggtgacggt
cagctgtgtcgtccctggggcatcagtgtggataaagagggatacgtggtggtggccgac
cgcagtaacaaccgagtacagatcttcaagccgtgcggtgccttccaccacaagtttggc
tccctgggctctcgccccggtcagtttgatcgtccagcgggcgtggcgtgcgacagccaa
cagcagatcatcgtaacggacaaagataaccaccgtgtgcaggtgttcacctttgacgga
cagtttatgctgaagttcggcgagaagggcactaagaacggtcagttcaactacccctgg
gatgtggcagtgaactctgcggggaagatcttggtctctgacaccaggaaccaccgcgtc
cagctctttggccctgacggctcgttcatcaacaagtacggctttgagggcaccctgtgg
aaacactttgactcgccgcggggtgtcgcctttaaccatgaggaccacctggtcgtcacc
gacttcaacaaccaccgtctgctggtgattcggccagattgccaatctgcccggttcctg
ggctccgagggtaccggtaacgggaagttcctgcgtccccagggcatagcagtggaccag
gagaaccggatcatcgttgccgactcgaggaaccaccgtgtgcaggtgttcgagcccaac
gggaacttcttatgcaaatttggcacccatggcagtggcttcggacagatggaccgcccc
tccggtgtcgctgtgacacctgacggagtcatcctggtcgtcgacttcggaaacaaccgc
atcctcaagttctaa
DBGET
integrated database retrieval system
