Oncorhynchus tshawytscha (Chinook salmon): 112237223
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Entry
112237223 CDS
T05605
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112237223
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112237223
09142 Cell motility
04820 Cytoskeleton in muscle cells
112237223
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112237223
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112237223
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112237223
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112237223
Hyaluronan
Extracellular matrix or blood plasma proteins
112237223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
112237223
NCBI-ProteinID:
XP_042185203
LinkDB
All DBs
Position
LG10:84118732..84187853
Genome browser
AA seq
1013 aa
AA seq
DB search
MMMRSEVIALCFLFGSAAHAQAVPECNKKHECPIDVYFTIDTSETIALQEPPPGSLVESI
KMFTERFAERLEDADYKGLVQIRWQLGGLHFSQRQQVFSRIQAKDAFIQGLRNIRYLGKG
TYIDCALANMTQEMTRLPSNPGALRFAVVITDGHVTGNPCGGVKVTAERARDEGIRMFVV
AATKNVDETGLREIANSPANVYRKDFLAVDLSGNRPVIQLDTIDRIIKTMTHLAYQECYK
VKCLETDGPPGPEGHRGQKGAKGDNGNPGPKGDRGRQGDPGIEGPIGHPGVKGEIGIKGE
KGEIGAEGKKGVAGLAGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGHPGDAGDGGLPGT
DGEKGDPGRSGRAGPLGPVGDSGPKGERGSAGTPGFPGNKGTPGTAGGPGVNGELGRRGD
FGPMGTPGTDGVKGDKGEAGPEGLRGLPGEVGNKGTKGDNGLPGPRGLPGTSGAAGKNGT
RGDPGDAGPRGDPGLPGLKGDVGRAGFSYPGPRGPTGDRGEKGGPGPRGGRGDCGPKGGP
GGKGTSGEEGEPGPQGEPGFRGPRGVGGRDGDPGPEGDPGLTECDVMNYIRETCGCCDCE
KRCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSMAKDPNSETGTRVGVVQYSHS
GTFQAIRLNDSKIDSLSAFKDAVKRLEWIAGGTWTPSALKYAYDHLIKDSRRAKANVTVV
VITDGRFDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIACQRDGRVLGMR
RFADLVAEEFIDKIETVLCPDPVIVCPDLPCKTEPAVASCVQRPVDLVFMLDGSERMGVE
NHRRAKEFIENVARRLTLANGQSDDRNARIALLQYGSKSEQKVEFSLTHNLTVIADSLAG
MSYMDSASSLGSAIIHAVNNLVMSQGSRLARRNAELSFVFITDGITASESLEEGVSAMRR
AEGVPTVIAMGTDTDQDVLRKVALGDTSAIFRGEDYATLGKPTFLERFIRWVC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgaggtccgaggtcatcgcgctgtgcttcctgttcggatctgcggcacatgca
caggccgtcccagaatgcaacaagaagcatgagtgtcctatagatgtgtactttacaatc
gacacatctgagaccatcgccctgcaagaacctccccctggatcactggtggagagcatt
aagatgtttacagagcgttttgcagagcgtctggaggatgctgactataaaggtctggtc
cagatcagatggcagttaggaggactacacttctcccagagacaacaggtcttcagccgt
atacaggccaaggacgccttcatccagggtttgaggaatatccggtacctgggtaaggga
acctacatcgactgcgccctcgctaacatgacacaggaaatgacacgtttgccctctaac
cccggagcgctgcgattcgctgtcgtcattaccgacggtcacgtgacaggaaacccgtgc
ggcggggtgaaggtgacggccgagcgtgcgcgcgacgagggcatcaggatgtttgtggtc
gcggccacgaagaacgtggacgagacgggtctgagggagatcgctaactctccggccaac
gtctacagaaaagacttcctggctgtcgacctcagtggcaacaggcctgttatacagctg
gacactatagaccgcatcatcaagaccatgacccatctggcctatcaggagtgctacaag
gtgaagtgtctggagacagatggaccccctggacctgaaggacacagaggacagaaggga
gctaaaggagacaacggcaaccccggtcctaaaggcgataggggaagacagggcgacccc
ggcatcgagggtcccatcggtcacccaggagtcaagggtgaaataggtatcaaaggtgaa
aagggggagatcggagctgaggggaagaagggtgtggccggcctcgctggacgcaatggg
acagacggacagaaggggaaaatcggacgcatcggtgctcccggctgcaaaggagatcca
ggagacaggggtcctgatggtcacccaggagacgcgggcgacggtggtcttcctggaaca
gatggagagaagggagatcccggtcgttcaggaagagcaggccccctcggcccggtggga
gactctggacctaagggtgagagagggagtgctggcacacctggcttcccaggaaacaaa
ggaacgccaggaaccgctggaggcccgggagtcaatggagaactggggagaagaggagac
tttgggccaatggggaccccgggaacagacggagttaaaggagacaagggcgaggcagga
cctgaggggcttagaggactaccaggtgaagtaggaaacaaaggaaccaagggagacaac
ggactcccagggccacgcgggctccccggtacttcaggagcggcagggaagaacggtacc
cgtggcgaccctggtgatgctggacccagaggagaccccggccttccaggactaaagggt
gacgttggaagagctggcttcagttacccaggaccaagaggaccaacgggagatcgcggg
gagaagggcggcccagggcccagaggaggcagaggagactgtggccccaagggaggacca
gggggaaagggaacctctggagaggagggagaaccagggcctcagggagaacctggattc
agaggaccaagaggagtgggtggacgagatggagatccaggtcccgagggagaccccggc
ctcacagaatgtgatgtcatgaactacatcagagagacctgcggctgctgtgactgtgag
aagcggtgtggggcgctggacatcgtgtttgtgattgacagctcagagtcagtgggtctg
accaattttactctggagaagaactttgtgatcaacaccatcaacagactgggatccatg
gccaaggaccccaactcagagacaggtaccagagtgggggtggtccagtacagtcacagt
ggaaccttccaggccatcaggctcaatgactccaagatcgactcactgtctgccttcaag
gatgcggtaaagcgtctggaatggattgccggggggacgtggaccccatcagcgctgaaa
tacgcctacgaccacctgatcaaagacagtcgcagagctaaagccaacgtcaccgtggtg
gtcatcacagatggacggtttgaccccagggacgacgactcactgctcacatacctctgc
agcgaccccagtgtggacgtgagcgctataggtataggggacatgtttgaccagatagag
gagaatgagagcctgaagagtatagcctgtcagagagacggtagggtgctggggatgagg
cgcttcgctgatctggtggcagaggagttcatcgacaagatagagaccgtgctctgccca
gatcctgtcatcgtgtgtcctgacctcccctgtaaaactgagccagcggtggccagctgt
gtccagcgccctgtggaccttgtgttcatgctggacgggtcagagaggatgggagtggag
aaccaccgccgagccaaggagttcatcgagaacgtggcgcgccgcctcaccctggccaac
ggccaatcagacgacaggaacgcccgcatcgccctgctgcagtacggcagcaaatcagaa
cagaaggttgagttttcgctcacgcacaatctgacggtgattgctgattcgctggctggg
atgagctacatggactccgcctcctctcttggcagcgccatcatacacgctgtcaacaac
ctggtgatgtcacagggcagccgtctggcgcgtcgtaacgcagaactgtcttttgtcttc
attaccgacggaatcactgccagcgaaagcctggaggagggcgtgtcggccatgcggcgg
gctgagggtgttcccacggtgatcgccatggggaccgacacggaccaggacgtgctgagg
aaggttgccctgggagacacgtcagccatctttagaggagaggactacgccacgctgggg
aaacccacattcctagaacgcttcatccgctgggtctgctaa
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