Oncorhynchus tshawytscha (Chinook salmon): 112244604
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Entry
112244604 CDS
T05605
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112244604
03015 mRNA surveillance pathway
112244604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112244604
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112244604
5.6.2.5 RNA 5'-3' helicase
112244604
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112244604
mRNA cycle factors
Common to processing body (P body) and stress granule
112244604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
112244604
NCBI-ProteinID:
XP_024268098
LinkDB
All DBs
Position
LG28:complement(31295674..31305397)
Genome browser
AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLENQVNGP
DGVQQNGDDPVVKASQLLAELNFEEDEEDSYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLSAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTLGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSSTGRSSNMYFQTHDQIGMIGPGPMASMNIPF
NLVMPPMPPPGYLGQVHCPPAGRGGGMKGKAGGGGVRGGRQRSRGMGNHGGGSGQHGLMS
GSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacactgaggaa
gcggagctgcttggagcagatacccagggttcggagtatgagttcacggattttaccctg
ccgagccagactcaaacaggccaaacgcagagtcagttggaaaatcaggtgaatgggcct
gatggagtacagcagaatggggatgaccctgttgtgaaagcaagtcaacttcttgcagag
ttgaactttgaagaagacgaggaagacagctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcacgatcctgcttgtgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacatctggcagccacattgtgaaccacctggtcaga
gccaagtccaaggaggtgactctgcacaaggatggtcctttgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctggggttcatccctgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcctggctg
gttaagatcccctctgagcaggagcagctccgggcccgccagatcaccgcccagcagata
aacaagcttgaggagctctggaaggaaaaccccacagccactctggaggacctggagaag
cccggcgtggacgaggagcctcagcacgtgttgctgcgctacgaggatgcctaccagtac
cagaacatctttggccccctggtcaaactggaggctgactatgataagaaactcaaagag
tcccagacccaagacaatattactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggagatgag
atttgcctgaggtacaagggagaccttgccccactctggaaaggcattggacatgtcatc
aaagtcccagacaactatggcgatgagatagccattgagctgaggagcagtgctggggcc
cccgtggaagtaccacacaacttccaggttgactttgtgtggaagtccacctcctttgac
cggatgcaaagtgccctgaagacctttgccgtggatgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtatatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccaggggccccctggcacggggaaaactgtcacc
tctgccactgtagtgtaccacctggccagacagggcaacgggcctgtgctggtgtgtgct
cccagtaacattgcggtggaccagctgactgagaagatccacatgtcaggtctgaaggtg
gtgaggctgtctgccaagagcagagaggccattgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctccagcagctgaag
gacgagactggggagctgtcctcctcggacgagaagcgctacagggccctgaagcgcacc
gcagagagggaactacttatgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacccaggcc
actgagccagagtgtatggtgcctgtcatactgggggccaagcagctgatcctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggctgccaaggcgggcctgtcc
cagtccctgtttgagcgtctcgtggtgcttggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgctttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcagctgaccgcatcaagaaaggctttgacttccagtggccacaa
ccagacaagcccatgttcttctacgtgaccctgggccaagaagaaattgcaagctctgga
acctcctatcttaacagaactgaggcttccaacgtggagaagatcaccaccaggctgcta
aaggctggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtct
tacctggtgcagtacatgcagttcagtggctccctccacaccaagctctaccaggaggtg
gagatagccagcgttgatgcgttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcattggcttcctcaacgacccacgccgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctactcaactactataaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagccccgcaagctggtcaac
gccatcaaccctgggggccgtttcatgagcacagccatgtatgatgcaagggaggctctt
attcctggatctgtgtatgaccgcagcagcactggacgttcatccaacatgtacttccag
acccacgaccagatcggcatgattggtccgggccccatggcctccatgaacattcccttc
aacctggtcatgccccccatgccgccgccaggctacctgggccaggtccactgcccccca
gcaggccgtggtggaggtatgaagggtaaggcgggcggcggaggggtgcgaggtgggcgc
cagcggagccgtggcatggggaaccacggcgggggcagcgggcagcacggcctcatgagt
ggcagccaggccagccaggacctgggctcccagcccttctcccagggacccctcacacag
ggctacatcaccatgagccagccttcccagatgagccagcctggcctctcccagcctgaa
ctctctcaggacagctaccttggcgatgagttcaagtcccagattgacgtggccctctcc
caagactccacctaccaaggggaaagagcttatcaacatggtgtgactggactgtcccag
tactag
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integrated database retrieval system
