Oncorhynchus tshawytscha (Chinook salmon): 112248375
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Entry
112248375 CDS
T05605
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112248375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112248375
04121 Ubiquitin system [BR:
otw04121
]
112248375
03036 Chromosome and associated proteins [BR:
otw03036
]
112248375
Enzymes [BR:
otw01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
112248375
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
112248375
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
112248375
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
112248375
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
112248375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
Motif
Other DBs
NCBI-GeneID:
112248375
NCBI-ProteinID:
XP_024273102
LinkDB
All DBs
Position
LG04:complement(24214657..24234402)
Genome browser
AA seq
780 aa
AA seq
DB search
MALSLSADEEDYDSESEQQREANRPKPKMGTSAAVKLPSNRSASGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDTLEEEDKF
NVMLMECSICNEIVHPNCLKVKDASGVVNDELPNCWECPKCNYAGKTGKVCKQKRGPGFK
YASNLPGSLLKEQKAVKEEGEATSTSTAKRKPEGDDISRHRPEEREPLHRHPPVLTPSTL
PRPRPEDKLRKKRKLFDDDEEEDFSVRKKGKADEPLFPKLLHQIKTEEEDQEEEVDEEET
DSLFWRGLERRDRLEDTEDWAEDGDGKDTKTNFPRPPLKTPVLDSDQSHCSSPQAGPSSE
GGSEPQEKGPRPKARRKRRLPNKELSKALNQEIQKTEDCLANENRQPLKVEPESENEEPK
RGFRIGSDLGGERPHLRTKEMNGTPWELRHFYPSQITPLGFNRSSPGTRPLPPRSPPKCV
QMERHVIRPPPISPPPDRLPLVDGKTHAVQREVWMKLFGHFTHKELCVCMRVCKTWNRWC
CDKRLWTNIDLNRCKSITPLMLSGIIRRQPLSLDLSWTNISKKQLSWLINRLPGLRVLLL
SGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNIL
DLRLAGLDITDASLRLIIRHMPLLSRLDLSYCNHINDHSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLTFFKRCGSICHIDLRYCKQVTKMACEQFIAEMSVSVQFGLKEDKLLQKLS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcactgagtgcagacgaagaggattatgattcagaatctgaacagcaacga
gaagccaaccggccaaagcccaagatggggacttcagcagcggtcaagctgccgtccaat
cgcagtgcgtctggcgccagacgcaggagaacacgctgccgaaagtgtgaggcgtgcctc
cgaactgagtgtggagaatgtcacttctgtaaagacatgaagaagtttggaggacctggg
cgcatgaagcagtcctgtatcatgaggcagtgcattgcacctgtcctgccccacacagct
gtgtgtgtggtgtgcggagaagcagggaaggaggacacattggaggaggaggacaagttc
aacgtcatgctcatggagtgctccatctgcaatgagattgtccaccccaactgcttaaag
gtaaaagatgcttctggcgtggtgaacgatgaacttcctaactgttgggaatgtcccaaa
tgcaactacgctgggaaaaccggaaaagtctgcaagcaaaaaaggggaccagggttcaag
tatgcgtctaacctccctggctccctgctgaaggagcagaaggcagtcaaggaggagggt
gaggccacatctacgtctacagccaagagaaagcctgagggagatgatatctcaagacac
agacctgaggaacgggagcccctccacagacacccccctgtcctgacccccagcaccctg
cctcggcccagacctgaggacaaactgaggaagaagaggaagctcttcgacgatgacgag
gaagaggacttcagtgtgaggaagaagggaaaggcagatgaacctctgttccccaaactc
cttcatcagatcaagactgaggaggaagaccaggaggaggaagtggatgaggaggagacg
gactctctgttctggcgaggcctggagaggagagatcgtttagaagataccgaggactgg
gcagaggacggggatggcaaagacacaaagacaaactttccaaggcctcctctcaaaact
cctgttctagacagtgaccagtctcactgcagctctccacaggctggccccagcagcgag
ggtggcagtgaaccccaggagaagggcccacgccccaaagcgcgccgcaaacgccgttta
cccaacaaggagctgagcaaagcactgaaccaggagatccaaaagactgaggactgccta
gccaatgagaaccgccagcccctcaaggtggagccagagagtgagaatgaggagcccaag
aggggcttccgcatcggcagtgacctgggaggggagcgcccccacctccggaccaaggaa
atgaacggcaccccctgggagctgcgccacttctaccccagccagatcacccctctgggc
ttcaacaggagctcccctggcacccggcctctgcccccacgctccccacccaagtgtgtc
caaatggagcggcacgtaatccggccaccccccatcagccccccgccggacagactgccc
ctggtggacgggaagacccatgcagttcagcgagaggtctggatgaagctctttgggcac
ttcacacacaaggagctgtgtgtctgcatgcgtgtctgcaagacatggaatagatggtgc
tgtgataaaagactgtggaccaacatcgatctgaaccgctgtaaatctatcactcccctc
atgctgagtggcatcatccgcagacagcccctctcactggacctcagctggaccaacatc
tccaagaagcagctgagctggctaataaaccgcttaccaggtctgcgggtgttgctgctc
tcagggtgctcgtgggtggctgtgtctgccctctgcacctctagctgccctctgctgcgc
accctggatgtgcagtgggtggaagggctcaaagatgcccagatgagggacctgctctcg
cccccgaccgataacagaccaggtcagttggacaaccgctgtaaactgaggaacatcctg
gacttgcgtctggccgggctggacatcacagatgcctctctgcgtctgattatcagacat
atgccgttactttcccgactggacctgagctactgcaaccacatcaacgaccattcggtc
aacctgctgacggccgcaggaaccacaaccagagattcactcacagagatcaacctgtca
gtttgtaatagggtgacagaccattcccttaccttcttcaagcgctgtggaagcatctgt
cacattgacctgcgctattgcaaacaggtgaccaagatggcctgtgaacagttcatagca
gagatgtctgtgagtgtacagtttggactcaaagaggacaaattactgcagaagctcagt
tag
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integrated database retrieval system
