Oncorhynchus tshawytscha (Chinook salmon): 112248400
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Entry
112248400 CDS
T05605
Name
(RefSeq) caskin-1 isoform X1
KO
K05760
paxillin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04370
VEGF signaling pathway
otw04510
Focal adhesion
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04370 VEGF signaling pathway
112248400
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112248400
09142 Cell motility
04810 Regulation of actin cytoskeleton
112248400
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112248400
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
LIM domain-containing proteins
Paxillin family proteins
112248400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paxillin
LIM
DUF4363
Motif
Other DBs
NCBI-GeneID:
112248400
NCBI-ProteinID:
XP_024273148
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Position
LG04:complement(23795801..23824368)
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AA seq
1196 aa
AA seq
DB search
MDDLDALLADLESTTSHISKHPVFLSEETPYSFPTGGNSYQDVSVPPPVPPPPSAEALNG
SVIDSPDSHHSSQQSLGSAPKSLWSRDSSSPPVSHIEEDHVYSFPNKQKSADQSAAAMSS
ALGSNLSELDRLLLELNAVQQNSPSFPTTEETAPPLPSCSITHYVQENGGPPDVMVSPRS
QEKTKRNGSQAVEEGRPTVESLLDELEGSLPTPSPSVLHNELDSSSQQQARMSASCATRE
LDELMASLSDFKPVLGSLGSMNSDLQLDQAGTSPSIILEVHPPPRTCSSLAAAAPSSLSP
SQPACDSPLFSLPAWELHIEEESGDSGGAVSPPHPSLSSPPPATVTSQSPLSFAESDPEP
KVVIDVSATILKSRQKSLVALNHSNPSLSTYPSPPNAAKPSLNSASVTLDNNPLKSHSSF
LEPCTTPPTVTKSTSPLTDMDLCFSTPTTTKSLSPVPVSTSKTPSPLHASVTKTPSPLHA
SVTKSPPLTASKAPSPSLVASPKSPSPPALTSPKISRRVLEPVPAAEPSLDEALDKLLAM
SFTKMENDRVLTDTLQLKGEAPQLKREVVQEVHEVIMPLDRREVQPDTTGCTRDGANTRE
GTITRDGSVMSGHIDGHRELMDWADVELNMCLQDGLDGSMTPYTERLYTDGSMTPMTEAS
WMDESLDGSSCPGTPDAAMDLPLLQPATMDRVSASGHLKSVIRRTKETPNVHPMYREGHP
RRGRMGPIIVNKSSSQDRLIEELQGKLGIGRLADRRHKQPDDWLTEGVIVMSKPQRFRGD
GAANEVDKIIIPSESPIPQRRVISPPQSPPAPCHPPIIEEPRRPSAVKQTPAPLPPPPPP
CPPPQLPLPHEPIPPPAPLVQPPPVPVQQPPAPKPEPPPPAAPSPVPPPPVQPAPPPPPP
KVLVSIGCQTEYDPIFPPMQIMAQGKGGPGGPPTQVNKLDNMLGSLQSDLHKLGVQTVAK
GVCGACCKPIVGQVVTAMGRTWHPEHFVCTHCQEEIGSRNFFERDGAPYCEMDYHNLFSP
RCHYCNGPILDKVVTALDKTWHPEHFFCAQCGSFFGPEGFHEKDGKAYCRKDYFDMFAPK
CGGCARAILENYISALNSLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHEQRGSLC
SGCQKPITGRCITAMGRKFHPEHFVCAFCLKQLNKGTFKDQNDKPYCQGCFVKLFS
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttagacgctttgttggcggacctggaatccacgacgtcccacatctccaag
catcctgtgttcctgtctgaggagaccccctactcctttcccactggagggaactcctac
caggatgtgtcagtccctcccccggtgccaccccctccctcggctgaggctctgaatggc
tctgtgatagactccccggactcccaccactcctcccaacagtccttgggttcagctccg
aagagcttatggtccagggacagtagcagcccgcccgtgtcccacattgaagaggaccac
gtgtacagtttccccaacaaacagaagtctgctgaccagtctgcggctgctatgagctca
gctctgggcagtaacctgtcagagctggacaggctgctcctggagctcaacgctgtccag
cagaactctccatccttccccaccacagaggaaacagccccacccctgccatcctgcagc
ataacccactatgtgcaggagaacgggggtccccctgacgtcatggtgagccctcggtct
caggagaagaccaaacggaacgggagccaggcggtggaggagggccggcccactgtggag
agtctgctggatgagctggagggctctctacccactcccagcccctctgtcctccacaat
gagttggactcttcctctcagcagcaggccagaatgtcagcttcctgtgccacacgcgaa
cttgatgagcttatggcctccctttccgacttcaagcctgtcctcggctccttggggtct
atgaactctgaccttcagcttgatcaggcaggaacctcccccagcatcattctggaggtc
catcctcctccacgtacctgctcctcccttgctgcagctgccccctcctccctctcaccc
tctcaacctgcctgtgactctcctcttttctctctacctgcatgggagctgcacatagag
gaggaaagtggggactcagggggggcagtgtcccctccacatccctcattatcaagccct
cccccagctactgtaacctcccagagccctctgtcatttgcagagagtgacccagaacca
aaagttgtcatcgacgtctctgcgaccatcctgaagtctcgtcaaaagtcgctggtagcc
ctcaaccactccaacccttcacttagcacatacccaagtcctcctaatgctgctaaacca
tcactgaactcagccagtgtcaccctggacaataaccccttaaaatcccatagttcattt
ctagaaccttgtacaactccccctactgttaccaagagcaccagtcccctgactgacatg
gatctatgtttctctactccaaccactaccaagagtcttagtcctgttcctgtctctacc
tccaagactccttcacctctccatgcttctgtcaccaagactccttcacctctccatgct
tctgtcaccaagagtcctcctctcactgcttctaaagccccctcaccatctctggtcgct
tctcccaagtctccctctcccccagctctcaccagccccaagatctccaggagagttcta
gagccagtccctgcagctgagccctctctggatgaagccctggataagctgctggcaatg
agtttcaccaagatggagaacgatagagtccttactgacacactgcagctgaagggggag
gcacctcagctgaagagggaagtggtgcaggaggtacatgaggtcatcatgcccttagac
agaagggaggttcagccagacactactgggtgtacccgggatggggcaaatacccgtgag
gggacaattacccgggatgggtcagtaatgagtggacacatagacgggcacagggagctc
atggactgggctgatgtggagctgaacatgtgtctccaagatggactggatggtagtatg
actccttatacagagagactttatacagatgggagcatgaccccgatgactgaggccagc
tggatggatgagtccctggatggctcctcctgccctggaactcctgatgctgccatggac
ctacctctgctgcagcctgccaccatggacagggtctctgcatctggacatctgaagtcc
gtgataaggcgcaccaaggagacccccaatgtgcaccccatgtaccgagagggtcacccc
cggagggggcggatgggccccatcatcgtcaacaagagcagctcacaggaccgcctcata
gaggaactgcaggggaagctggggattggccgattggctgaccgccggcacaagcagccg
gacgattggctcactgagggcgtcatcgtcatgtccaagccacagcgtttccgtggcgat
ggggctgcgaatgaggtggacaagatcattattccctcggagtcacctatacctcagagg
agggtcatttccccaccccagtctcccccagccccttgtcaccctcctattatagaagaa
cccaggagaccctcagctgttaagcagacccctgctcccctacctcctccccctcccccc
tgcccccctcctcaacttcctctaccccatgaacccatccctcccccagctcctctggta
caacccccaccggtcccagtacagcagccccctgcccccaagccagagccccctccacct
gctgctccatccccagtgccccctccaccagtgcagcctgcaccaccaccacctcccccc
aaggtcctggtgtccattggctgtcaaacagaatacgacccaatttttcctccaatgcag
atcatggcccaggggaaaggtggccctggaggccccccaacacaggtcaacaagctggac
aacatgctcggcagtctgcagtcggacctccataaactgggtgtgcagactgtggccaag
ggagtgtgtggggcatgttgtaaacccatcgtgggacaggtggttactgccatggggcgc
acatggcacccagagcactttgtgtgtacccactgtcaggaggagataggttccagaaac
ttctttgagcgtgacggagcgccctactgtgagatggactaccacaacctgttctcccca
cgctgccactactgtaacggccctatactggataaagttgtgaccgcgttggacaagaca
tggcatcctgaacacttcttctgtgctcagtgtggatcattctttggcccagaaggtttc
catgagaaggatgggaaggcgtactgtaggaaggactactttgacatgtttgcaccgaaa
tgtggcggctgtgcccgagccattctggagaactacatctctgcgctaaactccctttgg
catccagagtgctttgtctgcagggagtgcttcaccccatttgtgaatgggagtttcttt
gagcatgatgggcagccttactgtgaggtgcactaccacgagcagcgaggctccctctgc
tcgggttgtcagaagcccatcaccggccgctgcatcacagccatgggcaggaagttccac
ccggagcactttgtttgtgccttctgcctcaagcagctcaacaagggcaccttcaaggat
cagaatgacaagccctactgccagggctgctttgtgaagctcttcagttag
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