Oncorhynchus tshawytscha (Chinook salmon): 112252121
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Entry
112252121 CDS
T05605
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112252121
03015 mRNA surveillance pathway
112252121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112252121
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112252121
5.6.2.5 RNA 5'-3' helicase
112252121
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112252121
mRNA cycle factors
Common to processing body (P body) and stress granule
112252121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
nSTAND3
SLFN-g3_helicase
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
112252121
NCBI-ProteinID:
XP_024278854
LinkDB
All DBs
Position
LG06:complement(16418528..16438783)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYIKDLPLHACSYCGIHDPASVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGELAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVIPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRTRGMGNHSGSG
QSNGPNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
gcggagctacttggggctgatacccagggctcggagtacgagtttaccgattttaccctc
cccagccagacgcaaactcaaggccaaacccagagtcagctggacaatcaggtgaatggt
cctgatgaagggcttcacaatggaggagtcgatgatgtggccaaggcgagccaactcctt
gctgagttgaacttcgaggaggatgaagaagacacctattacatcaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatctgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatagtgaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagatgggccactgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccccgccaag
gccgactcggtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaag
gacatcaactgggacagctcccagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtgaagatcccctcagagcaggagcaactccgggcccgccagatcacagcccag
cagatcaacaagctggaggagctctggaaggataatcccacggccactctggaggacctg
gagaagcccggcgtagacgaggagccccagcatgtgctgctgcgctatgaggatgcctac
cagtaccagaacatcttcggccccctcgtcaagctggaagctgactacgacaaaaagctt
aaagagtcccagacccaagataatataacagtcaggtgggacctggggctaaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaagga
gatgagatatgtctgcgctacaaaggagagctggccccactctggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgttggagctcctgtggaaataccccacaacttccaggtggattttgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acatccgtgtcaggctacatctaccacaagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagttgcccaaacgcttcactgcacagggcctgcctgacctcaatcactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggccctccc
ggcactgggaaaacggtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
gggcccgtgctggtgtgtgctcccagtaacatcgcagtggaccagctgactgagaagatc
cacatgtctggcctgaaggtggtcaggctgtgtgctaaaagcagagaagccattgactcc
cctgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagctc
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgacgagaagcgc
taccgggccctgaagcgcaccgctgagagagagctgctcatgaatgcagatgtgatctgc
tgtacctgtgtgggggcaggagacccccgtctggccaagatgcagttccgctccatccta
atcgatgagagcacccaggccaccgagccagagtgcatggtgcccgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgcaagaag
gcagccaaagcaggcctgtcccagtctttgtttgagcgtctggtggtgctgggcatcagg
cccatccgtctgcaggtgcagtaccgcatgcacccggccctcagtgctttcccctccaac
atcttctacgagggctccctgcagaacggagtcactgctgctgaccgcatcaagaaaggc
tttgacttccagtggccacagccagacaaacccatgttcttctatgtgactcaaggccag
gaggaaatcgctagctctggaacatcctacctgaacagaactgaggcagctaatgtggag
aagatcaccaccaggctgctgaaggctggagccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagtttagcggctccctccac
accaagctctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaaa
gacttcatcatcctgtcctgcgtccgagccaacgagcaccagggcatcggcttcctcaac
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aaccccaaggccctgtccaaacagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgcgagagagcttaatgcagttcagc
aagccccgcaagctggtcaacgccattaaccctggagcccggttcatgagcactgccatg
tatgacgcccgcgaggctctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtacttccaaacccacgaccagatcggcatgattggggccgggccagcc
cacatggcagccatgaacatgcccattccattcaacttggtgatacctcccatgcctcca
ccaggctacctggcccaggctaacggccctgctgcaggccgtggtggggtgctgaagggc
aaagcggggcgtggcgggcgccagaggacccgcggaatggggaaccacagtggcagtggg
caaagcaatgggccaaacagccaggccagccaggacgtgtcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagccagccctcacagatgagccaacctggc
ctctcccagcctgaactgtcccaggacagttatctaggcgatgagttcaagtcccagatc
gacgtggctctgtcgcaggactcgacttaccagggtgaacgtgcataccaacatggtggg
gtgactggactgtcacagtactaa
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integrated database retrieval system
