Oncorhynchus tshawytscha (Chinook salmon): 112254952
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Entry
112254952 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: plexin-A1
KO
K06820
plexin A
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
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Gene cluster
GFIT
Motif
Pfam:
Plexin_cytopl
TIG
Plexin_RBD
TIG_2
Sema
TIG_plexin
PSI
PSI_integrin
Motif
Other DBs
NCBI-GeneID:
112254952
NCBI-ProteinID:
XP_042180688
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All DBs
Position
LG07:complement(59417232..59819924)
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AA seq
1891 aa
AA seq
DB search
MWPLLRSLVAPRLGNLLLLGVLVLLTVPSLTRGQPQPFKSFSPPDWGLTHLAIHNKTGEV
YVGTVNWIFKLSSNLTKLRSHMTGPVADNEKCYPPPSVQSCPHDLAQTNNVNKLLLIDYA
QNRLIACGSTSQGICQFLRLDDLFKLGEPHHRKEHYLSSVTESGTMSGVIITSQHSPASK
LFIGTPIDGKSEYFPTLSSRKLMSNEENADMFSFVYQDEFVSSQLKIPSDTLSKFPAFDI
YYIYGFSSEHFVYYLTMQLDTQLTSPDASGEQFFTSKIVRLCVDDSKFYSYVEFPIGCTK
DGVEYRLVQDAYLSRPGKQLADSLGISEDEDILFTVFSQGQKNRAKPPKESALCLFTLRR
IKEKIKERIQSCYRGEGKLSLPWLLNKELACINSPLQIDDNFCGQDFNQPLGGTSTIEGI
PLFIDKEDGMTSVAAYDYHGNTVAFTGTRNGRMKKILVNSVSPTHPALLYENLVVSDGFS
PILRDLLFSPDLQHIYILSDKQVSRVPVESCEQYTTCGQCLGSKDPHCGWCVLHNMCSRK
DRCEKADEPQRFASDQRQCVELSVNPKNISVTMSQVQLVLEARNVPDLSAGVNCSFEGYV
ETDGHIQGSLIYCLSPSAHNVIPITRNKGDKRMVKLYLKSKETGKTFAGVDFVFYNCSVH
SSCLSCVNGSFPCHWCKYRHICTQNANDCSFQEGRVNVSEDCPQILPSTQIYIPVGVTKP
ITLAACNLPQPQSGQKNYECVFHVQGEEHSVTALRFNSTSIQCQKTSYNYEGNDISDLPV
DLSVVWNGNFVIDNPFNIQAHLYKCPALRDSCGMCLKADPRFECGWCVQEKKCSLRQECV
PLESSWMHATTGNSRCAHPKITKLSPETGPRQGGTMLTITGENLGLQFKDIQTGVRIGKV
ACTPVEAEYISAEQIVCKLADATGYRVQEAHVEVCVRDCTHTDYKVVSPKAFTFVSPYFT
RVQPSKGPLSGGTHITIEGSHLNAGSAVAVKIGLHPCRFERRSAREMVCVTPAGQSPGGT
PVMVDINSAELRNPEVKFNYTDDPTIFKIEPDWSIASGGTMLTVTGTNLATIKEPKMRAK
YGKVQSVNNCTVLSNTVMMCLAPSLAFSEKGFSETGSNPDEIGFVMDDVRTTLVVNETFS
FYPDPVIEPLSSTGLLELKPSSPLILKGKNLIPAAPGNSRLNYTVLIGETPCVLTLSESQ
LLCEWPNLTGEHKVTVRVGGFEYSPGTLQMYSDSLLSLPAIIGIGGGGGLLLLVIIAVLI
AYKRKSRDADRTLKRLQLQMDNLESRVALECKEAFAELQTDIHELTQELDGTGIPFLEYR
TYAMRVLFPGIEDHPVLKEMEVQANVEKGLTLFGQLLTKKHFLLTFIRTLEAQRSFSMRD
RGNVASLVMTALQGEMEYATGVLKQLLSDLIDKNLESKNHPKLLLRRTESVAEKMLTNWF
TFLLYKFLKECAGEPLFMLYCAIKQQMEKGPIDSITGEARYSLSEDKLIRQQIDYKTLTL
HCVNPENENAXEVAVKGLNCDTVTQVKEKLLDAVLKGSPYSQRPKASDMDMEWRQGRMAR
IILQDEDVTTKIDNDWKRLNTLAHYQVTDGSVIALVPKQNSAYNISTSSTFTKSLNRYES
MLRTASSPDSLRSRTPMITPDLESGTKLWHLVKNHDHSDQREGDRGSKMVSEIYLTRLLA
TKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDEQADKHCISDLDVRHTWKSNCL
PLRFWVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHKLGKDSPSNKLLYAKD
IPNYKNWVERYYSDISRMPVISDQDMSAYLAEQSRLHLSQFNSMSALHEIYSYIVKYKDE
ILTALERDEQSRRQRLRSKLEQVINTMALAS
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atgtggcccctattgaggtcactcgttgcccctcgcctggggaacctgctccttctgggg
gtgctggtcctcttgacagtcccgtccttgaccagaggtcaaccccagcccttcaaatcc
ttctccccaccagactgggggctgacacacctggccatccacaacaagacgggtgaggtt
tacgttggcacggtcaactggatcttcaagctctctagcaaccttaccaagctgcggagc
cacatgactggccctgtggcggataacgagaagtgctatcccccgcccagcgtccagtca
tgcccccacgaccttgcccagaccaacaacgtcaacaagttgcttctcatcgactatgcc
cagaatcgactcatcgcctgcgggagcacctcccaaggaatctgtcagttcctcaggctg
gacgacctgttcaaactgggtgagccgcaccaccgtaaggagcactacctgtccagcgtg
accgagtctggcaccatgtctggggtcatcatcacatcccagcacagccccgccagcaag
ctcttcatcggcacacccattgacggcaagtccgagtacttccccactctctccagccgc
aagctgatgtccaacgaggagaacgctgacatgttcagctttgtctatcaggatgagttt
gtctcctcacagctcaagatcccttcggacactctcagcaaattccctgcatttgacatc
tactatatctacggcttcagcagcgaacattttgtctactacctgaccatgcagctggac
actcagctcacttcgcctgacgcctctggcgaacagttcttcacatccaagattgtccgc
ctctgtgtggacgactcaaagttctactcgtacgtggagttccccatcggctgcaccaag
gatggggtggagtatcgtctcgtccaggacgcctacctcagccgtcccggcaagcagttg
gctgactccttaggaatttccgaagacgaggacatcctgttcactgtgttctcgcagggc
cagaagaaccgggccaagccgcccaaggagtcagccctgtgcctgttcacactgcgccgc
atcaaggagaagatcaaggagcgcatccagtcctgctaccggggagaggggaagctctca
ctaccctggctgctcaacaaggaactggcctgcatcaactcacctctccagatcgatgac
aacttttgcggccaggactttaaccagccactgggtgggaccagcaccatagaaggaata
ccgctcttcatcgacaaggaggacggcatgacctcggtggccgcttacgattaccacggc
aacaccgtggccttcacaggcacacgcaacggcagaatgaagaagatcctggttaactca
gtgagtcccacgcatcctgctctgctctatgagaacctggttgtgagtgatggcttcagc
cccatccttcgagacctgctcttctctcctgacctccagcacatctacatactctccgac
aaacaggtgagcagggtaccagtagagagctgtgagcagtacaccacctgtggccagtgc
ctgggctccaaagacccccactgtggctggtgtgtcctccacaacatgtgttcccgtaag
gacagatgtgagaaagcagatgaaccccagcggtttgcctcagaccagcgtcagtgtgtg
gagctcagtgttaaccccaagaacatctctgtcaccatgtcccaagtccagctcgtgctg
gaggcgcgtaacgtccctgacctctctgcgggagtcaactgctccttcgagggttacgtg
gagacggatgggcacatccaggggagcctcatctactgcctgtccccctcggcccacaac
gtcatccccattacccgaaacaaaggagacaagcgcatggtgaagctctacctcaagtcc
aaggagacgggcaagacgttcgccggcgtggactttgtcttctacaactgcagcgtgcac
tcgtcgtgcctgtcgtgtgtgaacggttccttcccgtgccactggtgtaagtaccgtcac
atctgcacccagaacgccaacgactgctccttccaggagggccgcgtcaacgtgtccgag
gactgtccccagatcctgccctctacccagatttacatccctgtgggtgtgaccaagcca
atcaccctggccgcctgcaacctgccccagccccagtctggccagaagaactacgagtgt
gtgttccacgtgcagggagaggagcatagcgtcaccgcactgcgcttcaacagtaccagc
atccagtgtcagaagacctcgtataactatgagggtaatgacatcagtgacctgcccgtg
gacctatctgtggtgtggaacggcaactttgtcatcgacaaccccttcaacatccaagcc
cacctgtacaagtgccctgctttgagggacagctgtggcatgtgtctgaaggctgacccc
aggtttgagtgtggctggtgtgtccaggagaagaagtgttctctgaggcaggagtgtgtc
ccgctggagagtagctggatgcatgccaccaccggcaacagccgctgtgcccaccccaag
atcaccaagttgtctccagagacgggtcccagacagggtggaaccatgctgaccatcacg
ggggagaacctgggtctgcagttcaaggacatccagacgggggtccgcatcggcaaggtg
gcctgcacccccgtggaggcagagtacatcagcgctgaacagatcgtgtgtaagctggct
gatgcgacaggttaccgtgtgcaggaggctcatgtggaagtatgtgtgagggactgcaca
cacaccgactacaaagtcgtctcacccaaggccttcacttttgtgtctccctatttcaca
cgggtacagccctccaagggccccctctcggggggaactcacatcaccattgaggggagc
cacctcaatgctggcagtgctgtggctgtcaagatcggcctccatccctgccgcttcgag
aggcggagtgccagggagatggtgtgtgtgaccccggcgggtcagagtcctggaggtacc
cccgtcatggtggacatcaactcagctgagctcagaaacccagaggtcaaattcaactac
accgatgaccccaccatcttcaagatcgaacctgactggagcatcgctagtggcggcacc
atgttgaccgtcaccggcaccaacctggctaccatcaaggagcccaagatgagagccaag
tatgggaaagtccaatctgtcaacaactgcacagtgctcagcaacaccgtgatgatgtgt
ctggcgccctctctggccttctctgagaaaggtttctcagagacaggcagcaatcccgac
gagatcggcttcgtcatggacgacgtgcgcaccacgcttgtggtcaacgagacgttcagc
ttctacccagaccccgtgatcgagccgctcagttccacagggctgctggagctcaagccc
agctccccgctcatcctcaagggtaagaacctgatcccggcagcccctggtaactctcgt
cttaactacacggtgctgatcggtgagacgccctgtgtcctcaccctgtcagagagccag
ctgctctgtgagtggcccaacctcaccggagaacacaaagttaccgtacgtgtgggggga
tttgagtactcccccggtaccctccagatgtactctgacagcctgctcagcctgcctgcc
atcatcggcatcggagggggaggtggcctgctgctattggtcatcatcgccgtgctcatc
gcttacaagaggaagtcacgggatgccgaccgcacgctgaaacgcctgcagttacagatg
gacaacctggagtctcgagtggcgctggagtgcaaggaggcctttgcagagctgcagaca
gacatccatgagctgacccaggagctggacggaacgggcatccccttcctggaatacagg
acctacgccatgagggtcctcttccccgggatcgaggaccaccctgtgctcaaagagatg
gaggtccaggccaatgtggagaagggtctcaccctgttcggccagctgctcaccaagaag
cacttcctgttgacctttatccgcacgctggaggctcaacgctctttctccatgcgcgac
cgcggcaacgtggcatcgctggtcatgactgcgctccagggagagatggaatacgccaca
ggggtgttgaagcagctgctgtccgacctcattgacaagaacctggagagcaagaaccac
cccaagctactgttgagaaggacggagtcggtggctgagaagatgctcaccaactggttc
acgttccttctctacaagtttctcaaggagtgtgctggggagcctctgttcatgctgtac
tgtgccatcaagcagcagatggaaaagggacctatagactccatcacaggagaggcgcgc
tactcgctcagtgaggacaagctcatcagacagcagattgactacaagaccctgacccta
cactgtgtgaacccagagaatgagaacgccncggaggtggcggtaaaggggctgaactgt
gacaccgtgacccaggtgaaggaaaagctgcttgatgctgtgttgaaaggaagcccttac
tcccagagacccaaggcttcagacatggacatggagtggcgtcagggcaggatggccagg
atcattctccaggatgaggacgtcaccaccaagatagacaatgactggaagagactcaac
acactagcacactaccaggtgacggatggctcagtgatagccctcgtgcccaagcagaac
tctgcctacaacatctccacctcctccaccttcaccaagtccctcaacagatacgagagt
atgttgaggacggccagtagtccagacagcctgcgttctaggacccccatgatcacgcct
gacctggagagtggtaccaagctgtggcacctggtcaagaaccacgaccactcggaccag
cgtgagggcgaccgtggcagcaagatggtctctgagatatacctgaccaggctattggct
actaagggtacattgcagaagtttgtggacgacctgtttgagaccatcttcagtacggcc
caccgaggcagtgccctgccgcttgccatcaagtacatgtttgacttcctggacgagcag
gccgacaagcactgcatctctgacttggatgtacggcacacctggaagagcaactgtctt
cctctgcggttctgggtgaacgtgatcaagaacccccagtttgtgttcgacatccacaag
aacagcatcacggacgcctgtctgtctgtggtggcccagaccttcatggactcctgctcc
acctcagaacacaagctgggcaaagactcgccctccaacaagctgctatacgctaaagac
attcccaactacaagaactgggtggaacggtactactccgacatctcgcggatgcccgtc
atcagtgaccaggacatgagtgcatacctggcggagcagtcacggctgcacctcagccag
ttcaacagcatgagcgcactgcacgaaatctactcctacattgtgaagtacaaggacgag
attctgacggctttggagagggacgagcagtcgcggaggcagagactgaggagcaagctg
gagcaggtcatcaacacaatggccctggccagctga
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