Oncorhynchus tshawytscha (Chinook salmon): 112256328
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Entry
112256328 CDS
T05605
Name
(RefSeq) pituitary homeobox 2 isoform X1
KO
K04686
paired-like homeodomain transcription factor 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
112256328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112256328
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
112256328
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
AATF-Che1
XRCC4
DUF4524
Motif
Other DBs
NCBI-GeneID:
112256328
NCBI-ProteinID:
XP_024285263
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Position
LG08:complement(53008329..53062002)
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AA seq
319 aa
AA seq
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MNSMKDPLNLDHHHHHHQTGTKLSSTQHKALAMASSLQPLQRSVDSKHRLEVHTVSDTSS
PESVEKDSKGQSKNDDSSDDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI
AVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPSYTYNN
WAAKGLTSASLSTKSFPFFNSMNVNPLSSQTMFSPPNSISSMSMTSSMVPSAVTGVPGSS
LNSLNNLNNLSNPSLNSGVPTPTCPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYTS
VQNPASNLSACQYAVDRPV
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaactctatgaaggatccattgaatttagaccatcaccaccaccaccaccaaaccggg
actaaactctcttccacgcaacacaaggcactagcaatggcctctagtctgcagccgttg
caacggtctgtggactccaaacaccggttagaggtacacacagtatcggacacctccagt
ccagagtccgtagagaaagactcaaagggtcagagcaaaaatgacgactcttcagacgac
ccttctaaaaagaagcgacagcgccgacagaggactcactttaccagccagcagcttcag
gaactggaggccacgttccagcggaatcgctatccggacatgtctacaagagaggagata
gccgtgtggaccaacctcaccgaggcccgtgtccgggtttggttcaagaaccggcgagca
aaatggaggaaaagggaaaggaatcaacaagctgagctatgcaagaacggcttcggtcct
cagttcaatggacttatgcagccctacgatgatatgtaccccagctacacgtataacaac
tgggccgccaaagggctaacttcggcttccctgtcgaccaaaagcttcccttttttcaat
tccatgaatgtcaaccctttgtcatcgcagacgatgttctccccgccgaactccatttct
tcaatgagcatgacctctagcatggtgccgtccgcggtcactggcgtgcccggttcaagc
cttaacagcctcaataacttgaacaacctcagcaacccctctcttaattcgggagttccc
acgccaacctgcccgtacgccccgccgactcccccttatgtgtacagggacacttgcaac
tccagtctggctagcctgagactgaaagccaagcagcactcgagttttggatacaccagt
gttcagaatccggcctcaaatctgagcgcttgccagtacgccgtggatagaccagtctaa
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