Oncorhynchus tshawytscha (Chinook salmon): 112256445
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Entry
112256445 CDS
T05605
Symbol
fancm
Name
(RefSeq) Fanconi anemia group M protein isoform X1
KO
K10896
fanconi anemia group M protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
112256445 (fancm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112256445 (fancm)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
112256445 (fancm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCM-MHF_bd
DEAD
Helicase_C
ResIII
ERCC4
Motif
Other DBs
NCBI-GeneID:
112256445
NCBI-ProteinID:
XP_024285482
LinkDB
All DBs
Position
LG08:43176717..43245804
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AA seq
2156 aa
AA seq
DB search
MSGVNQMTLFQTWGASVPQKVSQTNNVKKSSGRRKTTQNSSTAASVKTQKRATGITLPPP
APRNTLWGEFDQGSTADSEVRHVEEVVAADEDEDDDDDLMVVAVYEAEKSLQIDGNLGQH
SGHTTNVESTCLTQISSSGSTYYKDFPGLDSSSAKVWIYPTNYPIRDYQLKISEAALFQN
TLVCLPTGLGKTFIAAVVMYNFYRWYPSGKIVFMAPTKPLVAQQIEACYKVMGIPQTHMA
ELTGSTQAQQRQELWRSRRIFFLTPQVLVNDLSRATCPALHVKCVVIDEAHKALGNHAYC
QVVRQLGSQTQQFRILALSATPGGDTNSVQQVISNLLISHIELRSEESPDIQAHSHQRSL
EKVVVPLGESLAGHQALYLQVLERFTGRLIQNRAMSHRDLRSLTKYQLILAREQFRKNPP
PHVTGAQQGALEGDFALCISLYHGYELLLQMGLRSLFLYVQGIMDGTKEKSRARNELQRN
ATFMDLYQEMAAMFVKPTGPEEPFIYSHPKLQKLDEVVLRHFKTWAESSSTGSGPQEVST
RVMIFSSFRESVQEIAAMLNRHRPLVKVMTFMGQASAGKGVKGFTQKEQLEVMRRFREGG
FNTLVSTCVGEEGLDIGEVDLIVCFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREER
TYNQSQSNKRRVYKSIVGNSHSFHMFPHNPRMLPDGVHPALHKMHITCGQFDHRESSGRL
AGGWRGRRSHSLEGQRESFILPHDLVGHQESVKKDGFLSPSELTHWESTMKLGEGEAPPI
LRRSRFLSKQEGSPPRVELLSSGPTRELSLWEWRHWQNQPFPTHIVDHSNRCHHFTKVME
LIDGLRQEEGESRYELELLPHLHKADVIGLTEEAQQEKSTKGKKQKEGKMTKSRTKMANL
SHKQKTSCLSSADLDRVELKKEVQRESISKAETTLVSPWTLIKNRVPSECHKEVTHDLRD
HPGLWPLSSTGDQPIMDMDFDCIILNNESESSEVNSPRDLESESVNCIAAVEQIDLNQLT
SIADREPKSDEDSELEALFYLPKWDAAVPKLQPLRQKLESLRVILVNVTELLSRSPPALH
FDLDSPQFDPGPTPFTTKDCSHTLPVEPLDELLDVGQTFHVNFSLEVDEDFADPASQSPN
VDLDVGSLDCESHCEPPQQQHSPSSPITVPAESMGRESALGSPSWDEVFEDDSNDIKEDD
MDDKADFKPPCHPTQPKAQHSKTNLDESMDLFGDDGTFLQMTIPDIPTPENVSIRIPSPL
KAPEREWLIGSSKSVTETKMVYQVKPSRSHASPVAQQEPAQDFENFVCSQDLFSVNFDLD
WEEDEGDTEAAPSPFPSKPSPPGSKKQEAPLSSTVNEPKISGSSTPPFSFHRKSVSTPLA
ACLGRKRADTSALASPQTSPLTSKSGALFSPIPTLGPRRVLLPGPSTTPSTSFSFLKRKC
QGTLQNAQTLKAQAGDPGNGSIEMGHSLSHKSILDPPHPGLCTSDSEEEVITRKRVHHHV
KANPLSSPVSMLLSDVDSPLQVTRKAKHAVARISDESEGEGEAMSDDDFQNTSVRQPRAP
PRVAVKPSASHGKAKQAVQHHHRGARHFLDEEAALSEGGEVSSDEEDGEEQNRSLEGFVV
SNTQCSQGINDSEMQGVYLKSVRSPAVAGKFKMIYKLNHNMDIFSQVPELDETYAEDSFV
VRGSDEEELGEEDEEVPLELIYEDSFVEGRRQYPTRRKALIRNIRAQAGSGPATLDKRAA
DPQPNPAGKNKRSRIVHLVDSSSEEEVEKSRNSVKAEGVAAICRLTELQQQNDWVFKAPR
QQVPPGGSTRASTASCVVGPRVLSGARSSSMNSVMEPSAPSGTSRTSSVSSVRGPREEQQ
EERCRQRLHQQALLSEELDFEHSESLLLSSKQPQATSSTSSAPHVQSSFGQAATLSKPPA
SSSNPSGLVAVLVDSRCITACVDVVSSLRQRCAVAAHVCSLDGCDFVVSNRMAVERQCQS
ELAGMPNRKRLVERVTSLQSLFERVCLIVEKDRTKPSEASRPFQPTRYYDSTLASLVRAG
VRLLVSRGPEESATLLAELARVEQRKGQAISVPLEVKGHRQQALLFYRTLPCVSYVNALN
MSHSFRSVGQLVNSSIEALQKGACVSRPRAEEIYRCLRYSCDTTLMTTNTPGKNNL
NT seq
6471 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtgtgaaccaaatgactttgttccagacgtggggagcatctgttccgcaaaag
gttagtcaaacgaataatgtaaagaagtcttccggacgacgaaaaacaacgcaaaacagc
agcacagcagcctcagtcaagactcagaaaagggcgactggtataactttgccgcccccg
gcgccccgtaacacgctatggggtgaatttgatcaggggtccacagctgacagcgaggtg
agacatgtcgaggaggttgttgctgctgatgaagatgaagatgatgatgatgatttaatg
gtagttgctgtttatgaggcggaaaagtctttgcaaattgatggaaaccttggacaacat
agtggacacacaacaaatgttgagagcacttgtctcacacagataagctcaagtggatca
acatattacaaagacttccctggccttgacagctcctctgcaaaggtatggatctacccc
accaactatcccataagggactaccaactaaagatatcggaggcagctttatttcagaat
acgctggtatgcctccccactggcctgggcaagactttcattgctgctgtggtaatgtac
aacttttatcgatggtatccatctggaaagatagttttcatggcaccaacaaagcccctg
gtggcacaacaaatagaagcgtgctacaaagtgatgggtattccacagacacacatggca
gagttgacagggagcacgcaggctcagcagaggcaggaactgtggaggtccaggcgcatc
ttcttcctcactccccaggtgttggtgaacgacctgtctcgagccacctgccccgcgctg
cacgtcaagtgtgtggtgattgacgaggctcacaaggcactggggaatcatgcctattgc
caggtggtgagacagttggggagccagactcaacagtttcgcatcctggcactcagcgcc
acgccaggtggagacacaaattcagtgcagcaagtcatatccaacctgctgatttcccac
attgagctgcggtctgaagagagtcctgacatccaggcccactcccaccagcgcagcctg
gagaaggtggtggttcccttgggggagtcgctggccgggcaccaggccctctacctacag
gtactggaacggttcacgggccgtctgattcagaacagggcgatgtctcaccgcgacttg
cgctccctcaccaagtaccagctcatcctggcccgggaacagttccgcaagaaccctccg
ccccacgtcacgggggctcagcaaggcgctctggagggggactttgccctgtgtatcagc
ctgtaccatggctacgagctgctgctccaaatgggcctgcgctccctcttcctctatgtc
cagggcatcatggatggcaccaaagagaagtctcgagccaggaacgagctacagcgcaac
gccaccttcatggacctgtaccaggagatggcggccatgtttgtaaagcccaccggcccc
gaggagcccttcatctacagccaccccaaactgcagaagcttgatgaggtagtgctaagg
cactttaaaacatgggctgagagctccagcactggctctgggccccaggaagtgagcaca
cgtgtgatgatcttttcgtcgttccgggagagtgtgcaggagattgccgccatgttaaat
cgccaccggcccctggtcaaagtcatgacctttatgggccaggcctcggcagggaagggg
gtcaaagggttcacccagaaggagcagctggaggtgatgcggaggtttcgggaggggggc
ttcaacaccctggtgtccacctgcgtgggcgaggaggggctggacatcggcgaggtggac
ctcatcgtgtgcttcgacgcccagaagagtcccatccgcctggttcagcgcatgggccgc
accggacgcaaacgccagggccgcatagtggtcatcttggccgagggacgagaggagaga
acctacaaccagagccagagcaacaagcgcagggtgtacaagtctatcgtggggaacagc
cacagtttccacatgttcccccacaacccccgcatgctgcccgacggggtgcatcccgcc
ctgcacaagatgcacatcacctgtggccagtttgaccaccgggagagcagcgggcggctc
gccgggggttggagggggcgcaggtcccactccttggagggccaacgtgagtcctttatt
cttccgcatgatctagtcgggcaccaggagagtgtgaagaaggatggcttccttagcccc
tctgagctcactcactgggagtctacgatgaaactgggggagggggaggctccacccatt
ctaagacggtcccgcttcctctcaaaacaggaaggctcgccacctcgggtggagctgctt
tccagcgggccaaccagggagctgtctctgtgggagtggagacactggcagaaccagccc
ttccccactcacattgtggaccactccaaccgctgccaccacttcaccaaggtcatggag
ctcattgacggcctgcgccaggaagagggtgaaagcagatatgagttggagctgctgccc
cacctccacaaagcagatgtcataggcctcacggaggaagcacagcaggaaaagtccacc
aaaggaaagaagcagaaagagggaaaaatgacaaaatccagaaccaaaatggccaacctg
agccacaagcagaagacttcctgcctttcctcagctgacctagaccgtgtagaactcaaa
aaggaagttcagagggaaagcatttctaaagcagagacaaccttagtctctccatggacc
ctgataaagaacagagtcccttcagaatgtcacaaggaggtgactcatgacctcagagat
cacccaggcctctggccactctcctccacgggtgaccagccaatcatggacatggatttt
gactgtatcatactcaacaacgagagtgaaagttcagaggtcaattctccaagggatttg
gagagcgaatcagtgaactgcattgctgctgtagaacagattgacctcaatcagttgacc
tcaattgcagaccgtgaacccaagtcagatgaagattctgaactggaggctttgttttac
ttgcccaaatgggatgctgctgtccccaagttgcagcccctgagacagaagttagagagc
ttgagggtcattctagtcaacgtgacagagcttctgtctaggtctcctccagctttgcac
tttgacctggacagccctcagtttgaccctgggcccacccccttcaccaccaaggactgt
tcacatacacttccggttgaacctctggatgaactcctggatgtaggtcagacattccac
gtgaatttctccctggaagtggatgaggactttgccgatcctgcttctcaatctcccaat
gttgatttagacgttggttctctagactgtgaaagccattgcgaaccacctcaacagcag
cactccccttcatcacccattactgtgccagcagaaagcatgggtagggaaagtgccctt
ggcagccctagctgggatgaggtcttcgaggatgacagcaatgacataaaggaggatgat
atggatgataaagcggacttcaagccaccatgtcatcccactcagcctaaagcccagcac
tctaaaaccaacctggatgagagcatggacctgtttggagatgacggcaccttcctccag
atgaccattccggacatccctacgccagagaacgtcagtatccgaatacctagccccctg
aaggctccggagagggaatggttaatagggtcaagtaaaagtgtgacagaaacaaagatg
gtgtatcaggtcaaacctagtcgtagccatgcttctcctgtagcgcagcaggaacctgct
caggactttgagaactttgtctgttctcaggatttgttctctgtcaactttgacttggac
tgggaggaggatgaaggggacacagaggctgctcctagtccgttcccctcaaaaccttca
ccccctgggtccaaaaaacaggaagcacccctttcctccacagtgaatgagccaaaaatc
tctggctcatccactcccccctttagtttccataggaagagcgtgtccacacccctggca
gcctgtctgggaaggaagagggcagacacctctgctctggcttcgcctcagacctctcct
ctgacctccaagagcggagctctgttctcaccaatccccacattaggaccgaggcgagtt
ctcctgcctggtccttccaccaccccatccacttcgttctcattcttaaagaggaaatgc
caggggaccttacagaatgcccagactctcaaagctcaggcgggggacccaggaaatggt
tcaatagagatgggacacagtttgtctcacaaatccatcttggacccccctcatccaggc
ctgtgcaccagtgacagtgaggaggaggttatcacccgtaagcgggttcatcatcatgtc
aaggcgaaccccttgtcttctcccgtgtcaatgcttctcagtgatgtggattctccttta
caagtgaccaggaaggcaaagcatgcggtggcacgcatttcagatgagagcgagggggag
ggggaggcgatgtctgacgatgacttccagaatacctctgttcgacagccaagagcgccc
ccccgtgtggctgtgaaaccatccgcgtcgcatgggaaagctaagcaggccgtgcagcac
caccaccgaggagcccgtcactttctggacgaggaggcggcgctgtccgaggggggggag
gtgtcatctgacgaagaggatggtgaagagcagaaccgctcactggagggcttcgttgtg
agcaacacccagtgctcccagggaatcaacgattctgagatgcagggggtttacctaaag
tcagtgagaagccctgctgtggctggcaagttcaaaatgatctacaagctaaaccacaac
atggacatcttctctcaggtgcctgagctggacgagacatatgcggaggacagctttgtg
gtgaggggcagtgatgaggaagagctcggcgaggaggatgaggaggtcccattggaactt
atctacgaggactccttcgtggaggggaggaggcagtaccccaccagacgcaaggcgctg
atccgaaacatcagggctcaggctgggagcgggcctgccactctggacaagagggctgct
gaccctcaacctaatcctgctgggaaaaacaagcgctcccgcatagtgcatttggtggac
tccagctcggaagaagaagtggagaaaagtagaaatagtgtgaaagctgaaggtgttgct
gccatctgcaggctaactgagttacagcaacagaatgactgggtgtttaaagctccacgg
cagcaggtgccccctggtggatccaccagagcctccacagcgagctgtgtggtggggcct
agagtcctcagtggagccaggtcctcctctatgaactctgtgatggagcctagcgcccca
agtggaaccagcaggacctcctcagtgagctccgtgaggggacctagagaggagcagcaa
gaagagaggtgtcgccagaggctccatcagcaggccctcctgtctgaggagctggacttt
gagcattcggagtctctgttgctctcaagtaaacagccacaggctacctcctccacgtcc
tcagcaccccacgtccagagctccttcggtcaggccgccactctaagcaagccccctgcc
tcgtcatcgaacccatcgggccttgtcgctgtactggtggacagccgctgtatcacagcc
tgcgtggatgtggtctccagcctgcgccagcgttgcgctgtcgcggcccacgtgtgctcg
ctggacggctgcgacttcgtggtcagtaaccgcatggcggtcgagaggcagtgccagtcg
gagttggccgggatgccgaaccgcaaacggcttgtggagagggtgaccagtttgcagagc
ctatttgagcgggtctgtctcatcgtagagaaggaccgcaccaaaccaagtgaagcttcc
cgtcctttccaacctacacgctactatgacagcacactggccagcttggtgagggcaggc
gtccgactcctggtgagtagggggcctgaggagagcgccaccctactggctgaactggcc
cgagtggagcagaggaagggccaggctattagcgtgcccttagaggtcaaaggtcaccgg
cagcaggcgctactcttctaccgaacgctgccctgtgtcagctatgtcaacgccctcaac
atgagccacagcttcagatcggtgggccaactggtcaacagctctatcgaggctctacag
aagggggcgtgtgtgagccgccccagagccgaggagatctaccgctgcctacgctactcc
tgtgacaccaccctgatgactacaaacacacccgggaagaacaacctttaa
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