Oncorhynchus tshawytscha (Chinook salmon): 112264224
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Entry
112264224 CDS
T05605
Name
(RefSeq) transcription factor SOX-6
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112264224
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112264224
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
DUF2408
MoCoBD_1
Motif
Other DBs
NCBI-GeneID:
112264224
NCBI-ProteinID:
XP_042177076
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All DBs
Position
LG04:69594638..69733250
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AA seq
805 aa
AA seq
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MSSKQATSPFASVADGEEAMSQDHLSWDKEESAEAHGTPQLPLHSLLHSKGSMDELQPLS
SVPPESDWDSMVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGARERGDLLSGSAFGTP
ERRKGSLADVVDTLKQKKLEEMTKSEQDESSCMETLLSKDWKEKMERLDTGDLLGEVKGT
PESLVEKEHQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQMELARQQQEQYYEE
GCSMIARQQQQLLQQQHKINILQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFP
PGISYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPPLPQPPN
NSGPISPSGLKNDKRSSSPITQVKEEGTQPLNLSARPKTAELVKSPTSPTHSLFTGSKTS
PNSLSKSGIPSPLGGMGRGSSLDILSSLNSTALFGDQDAVMKAIQEARKMREQIQREQLQ
HHQQGMEAKLSALTGMGLNNCSRADKSWFTEYIERAHFESLGHHLSKLGEDGKIGHRVID
LTRPEDLDGWKALNGSGTGADKPQQYYCWPTGGASTAEARVYREARGRNSNEPHIKRPMN
AFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPFYEEQARLSKIHLEKYP
NYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQQPQIPISTSAGVVYPGA
ITMATTTPSPHMTSECSSASASPEPAIPVIQSTYNMKIEPSAMLTNVPIINREVDEMDMY
EDFDEEPKSDYSSETETLEPIVSAN
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaagccacctctccgtttgcctccgtcgccgatggggaggaagccatg
agtcaggaccacctgtcctgggataaggaggagagtgccgaggcccacgggacgccccag
ctgcccctgcacagcctgctccacagcaagggctccatggacgaactgcagcccctcagc
agtgtccctccagagagtgactgggacagcatggtgtcagcccagcagcgcatggaatct
gacagcaataaagtatgttccctgtactccttccggaataactcaacctccccacacaag
cctgaggagggggcccgggagcgcggcgacctgctgagcggatctgcgttcggaactccg
gagcgccgcaaaggaagcctggccgacgtggtggacacactgaagcagaagaagctggag
gagatgacaaagtcagagcaagatgaatccagttgcatggaaacacttctgtcaaaagac
tggaaagagaagatggaaaggctcgacaccggtgatcttctgggagaagttaaaggtact
ccagagagcctggtagagaaggagcaccagctgagcaccatgatcactcagctgatcagc
ctgagagagcagctcctggccgctcacgatgagcagaagaagctggccgcctcacagatg
gagaaacagagacagcaaatggagctggcccgccagcaacaggaacagtattatgaagaa
gggtgttccatgattgccagacaacagcagcagcttctgcagcagcagcacaaaatcaat
atcctccagcagcagattcaggtccagggtcacatgcctccgctcatgatccctattttt
ccacacgaccagcgtaccctggcagcagccgccgcagcccagcagggctttctcttccca
ccgggaatctcttacaagccaggtgacaactacccggtgcagttcattccatccacaatg
gcagctgcggcagcgtcaggactcagccccctccagcttcagcaactgtatgccgcccag
cttgccagcatgcaggtctctcctggagccaagatgccgccactcccccagcctcccaac
aacagcgggcccatctctccctccggcctgaagaacgacaagagatcctccagccctatc
actcaagtcaaggaggagggaacgcagcctctcaacctgtccgcccggcccaagacggca
gagctggtcaagtcccccacatcccccacacacagcctgttcacaggcagcaagaccagc
cccaacagcctgtccaagagcggcatccccagtcccctcggaggcatgggccgtgggtct
tctctggacatcctgtccagcctgaactccacagcgctgttcggggaccaggatgcggtg
atgaaggccatccaggaggccaggaagatgagagaacagatccagagagagcagctgcag
caccaccagcagggcatggaggccaagctctctgccctcacaggcatgggcctcaacaac
tgcagcagggctgacaagagctggttcactgagtacattgagcgggcacactttgagagc
cttggtcaccatcttagcaaactgggagaggatggcaaaattggccacagagtcatcgac
ctcaccaggccagaggatctggatgggtggaaagctctgaatggctctggtaccggagca
gataaaccacaacagtattattgttggcctacaggaggtgccagcacagccgaggcacgg
gtctacagagaagcccgggggaggaacagcaacgagccccacatcaagagacccatgaac
gccttcatggtgtgggccaaagatgagcgccgcaagatcctccaagccttcccagacatg
cacaactccaacatcagcaagatcctgggctctcgctggaagtctatgaccaaccaggag
aagcagccgttctatgaggagcaggcccgtctcagtaagatccacctggagaagtacccc
aactacaagtacaagccccggcccaagaggacctgcatcatcgacgggaagaagctccgc
atcggcgagtacaagcagatgatgcgctcgcgacggcaagagatgaggcagttcttcact
gtggggcaacaaccgcagatccccatcagcaccagcgccggcgtggtctaccctggggcc
ataaccatggcaacgaccacaccctcccctcacatgacgtcggagtgctccagcgcctca
gcaagtccggagccggccattcccgtcatccagagcacctacaacatgaagatagagccc
agtgccatgttaaccaatgtccccatcatcaacagagaggtagatgagatggacatgtac
gaggactttgacgaggagcccaaatcggactacagcagtgagactgagacactggagccc
atcgtcagcgccaactga
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