Oligella ureolytica: I6G29_02450
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Entry
I6G29_02450 CDS
T07321
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oue
Oligella ureolytica
Pathway
oue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6G29_02450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oue03400
]
I6G29_02450 (mfd)
Enzymes [BR:
oue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6G29_02450 (mfd)
DNA repair and recombination proteins [BR:
oue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6G29_02450 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
AAA_30
ERCC3_RAD25_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QPT40487
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All DBs
Position
459704..463201
Genome browser
AA seq
1165 aa
AA seq
DB search
MTANSDQSSTIEQSIQTLVKQLKPGQRYTAPRPSGSGDAYFLSLLAQQVKKTIVVFSADP
IQARRLVNEVKVFNSTLNCLHFPDWETLPYDAFSPHQDLISERLLALHTLRNKEVDILVL
PVTTALACLAPVSFIAAYTFSFKKGQRLDENAFKEQLILANYEHVAQVTAAGEFSIRGSL
IDLFPMGSPIPYRIDLFDDEIDSIRAFNVDTQRSLYPVDEINLLPGREFPMDEAARNHFR
SKFREYFEGDPSKALPYKDISNGIAFAGVEYYLPLFYAETATIFDYLPADSISLSLGNLE
TSIQSFHDDTLSRYNFLKYDSERPILAPENLYLSAEQFFTALATMPRIHWMEDQEHPHIK
PSPDVAVQARAQQPLQRLEHLLLKAENRTILCADSAGRRETLSQMLSEHALTPDANIHSL
EQVRANKNALPNFSLIVANLYKGFSLPDENIVVLTEGDLYPETAASRLQRRKKESQTNVD
SMVRDLSELMPGDPVVHVNYGIGRYLGLVNMDLGEEGPVEMLKMEYADNTELLVPVSQLH
VISRYGGADPENAPLHRLGSGQWDKARKKAAIKIRDTAAELLNLYAHRASRQGVEFTLPL
SDYQAFVEGFGFEETPDQAAAIEAVIEDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVA
NGKQVALLCPTTLLAEQHAQTFANRFADWPVTVAELSRFRTGKQTQQVLESLEKGTTDIV
VGTHKILAKDTKFSNLGLVIIDEEHRFGVRQKEALKALRAEVDILTLTATPIPRTLGMSL
EGVRDFSVIATAPEKRLAIKTFVRREDSSTIREACLRELKRGGQVYFLHNEVSTIHNRAA
RLQELIPEARIGVAHGQMSERELEQVMKGFYQQRYNILLCTTIIETGIDVPSANTIIIHR
ADKLGLAQLHQLRGRVGRSHHQAYAYLLTPGQDAITPNARKRLEAIQSMEELGSGFYLAM
HDLEIRGSGEILGDSQSGNIHEIGFSLYTEMLNKAIKALREGKEPDYESPFDQSCEVRLH
ASALLPNDYCPDVSARLSIYKRLSHAGSLDELRQIQEELIDRFGSLVDEAKNLLSTHRLR
LLAEPFTITVVDVGDDKAIITFDKASRVDPLSLIDLVQKNKHIHFKGPERILIDLKEGLT
LDQRIQEVASILGRLQHAPEEATVN
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaactcggaccaatcctctaccattgagcaatcaattcaaaccctcgtcaaa
caattaaagcccgggcaacgctacaccgcacctcgcccttcaggctcaggtgatgcttat
tttctaagtttattagcccagcaagtcaaaaaaacgattgtagtttttagtgcggacccg
attcaagctaggcgtttggtcaacgaagtcaaggtttttaattcaaccttaaactgcttg
cattttccggattgggagaccttaccctatgatgctttttcaccgcatcaagatttaata
tcagagcgtctactggcactccatacgctacgtaacaaggaagtcgatattttagtgctt
cccgtgaccactgccttagcctgcttagcccccgtctcatttattgccgcctacacgttt
tcttttaaaaaaggtcaacgtttggacgaaaacgcttttaaagagcaattaatactggca
aactacgagcatgtggctcaagtcacagcagccggtgagtttagtatacggggcagcttg
attgatttattcccgatgggttcacccatcccctaccgtatcgatttatttgacgatgaa
attgattcaatccgcgcttttaatgtggatacacagcgcagtctctacccggtcgatgaa
attaatttactgcccggtcgcgaatttcctatggatgaggcggcacgtaaccacttccgc
tctaaattccgcgagtattttgaaggcgacccatctaaggcgctaccgtataaagacatt
agcaacggcatcgcctttgccggcgtggagtactatctgccacttttttatgcggaaacg
gcaaccatttttgattatctgccggccgatagcatcagtctcagtttaggtaacttagaa
acaagtattcaaagcttccacgatgacacattgagtcgctacaactttctgaaatacgat
agcgaacgacctattttagcccctgaaaacttataccttagtgctgagcagttttttact
gcattggctaccatgccaagaattcattggatggaagatcaggaacaccctcatattaaa
ccaagccctgatgtggccgtacaagccagagcgcaacagcccttacaacgcttagaacat
ttactgctcaaggctgaaaaccgcaccattttatgtgccgatagcgcaggtcgccgtgaa
accttgtcgcagatgctaagtgagcatgctctgacgcctgatgccaatattcattcccta
gaacaggtccgggctaacaaaaacgcattgcccaatttttccttaatcgtggctaatcta
tacaagggattcagcctacccgatgagaatattgttgttcttacagaaggcgacctctat
ccggaaaccgcagcatcacgcttacaacgtcgtaaaaaagaaagtcagaccaacgtcgat
tccatggtgcgtgacttatctgaactcatgccgggcgatccggtggtacacgttaattac
ggcatcggtcgctaccttggtttagtcaatatggacttaggtgaagaagggccggttgag
atgttaaaaatggagtatgccgacaataccgagctcttagtaccggtctcacagctccat
gtcatttcccgttatggcggtgctgatccggaaaatgcgcctttacatcgcttaggttcg
ggtcaatgggacaaggccagaaaaaaagcggccatcaaaattcgcgataccgctgccgag
ttgctcaacctatatgcccatcgagcttcacgacaaggcgttgaatttactttgccgctt
agtgactatcaagcctttgttgagggtttcggctttgaagaaacccctgaccaagccgcc
gccattgaggcagtcattgaggacatgacctcaggtaaaccgatggatcggttagtttgc
ggtgatgtcggtttcggtaaaaccgaagttgccttacgagctgcgtttattgcagtcgcc
aacggcaaacaagttgctctactttgtccaaccaccttattagctgaacagcatgcccag
acctttgccaatcgctttgccgattggccggtgacggtggctgaattatcacgtttcaga
acgggcaaacagacgcagcaagtactggaaagccttgaaaaaggcaccacggacatcgtc
gtcggcacccacaaaattcttgctaaagacaccaaattcagtaatttaggtctcgtgatt
attgatgaagaacaccgctttggtgtgcgccaaaaagaagcgctcaaagcgttacgcgct
gaggtcgatattctgaccctaactgccacacctattccccgcacactgggtatgtcctta
gaaggcgtgcgcgacttctcagtcattgccactgcccctgaaaagcgcttagccattaaa
acctttgttcgtcgagaggatagctcaaccatacgtgaagcgtgtttgcgagagctaaaa
cgcggtggtcaggtctacttcctacacaatgaagtatcaaccattcataaccgtgcagcg
cgcctgcaagagctgattcctgaagcacgaatcggtgtcgctcacggtcaaatgtctgaa
cgtgagttagaacaagtgatgaagggcttttaccagcaacgctacaatatattgctgtgt
accaccattattgaaaccggtattgatgtaccaagcgccaacacgattattattcaccgt
gcagataaattaggtcttgcccagctgcatcagctgcgtggtcgtgtcggtcgctcccac
catcaggcctatgcctatctactgactcccggccaagatgcgattacgcctaatgcacgt
aagcgtctcgaagcgattcagtccatggaggagctaggttccggcttctatcttgccatg
catgacttagagattcgtggtagcggtgagattttaggtgattctcaatcgggtaatatt
cacgaaatcggcttttctctctatacggaaatgctaaacaaagcgattaaagcattgcgt
gagggcaaagaacctgattatgaatccccctttgatcaaagttgcgaggttcgattacac
gcctctgccctgctgcctaatgactattgccctgatgtcagtgcacgcttatcaatctat
aagcgcttatctcacgctggcagcctcgacgaattacgccagattcaggaagagctgatt
gatcgctttggcagtctggtcgatgaagctaaaaacttactctccacccatcgtctacgc
cttttggcggagccatttacgattacggtggtagatgtgggtgatgacaaagcgattatt
acctttgataaagcctctagagtcgatccgctcagtttaattgatttggtgcaaaaaaat
aagcacattcatttcaaaggacctgaacgtattttaattgacctaaaagaaggattaacc
ttggatcaacgcatacaagaagtcgcctccatcttaggacgtctacagcatgcccctgaa
gaagcgacagttaactaa
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