Oligella ureolytica: I6G29_13390
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Entry
I6G29_13390 CDS
T07321
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
oue
Oligella ureolytica
Pathway
oue02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
oue00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I6G29_13390 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oue03021
]
I6G29_13390 (rpoD)
Transcription machinery [BR:
oue03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I6G29_13390 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
UTP20_C
Motif
Other DBs
NCBI-ProteinID:
QPT40072
LinkDB
All DBs
Position
2753139..2755517
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AA seq
792 aa
AA seq
DB search
MVKNTDTTNKVVAKKAAATASKSIDEANTNQEVVATEASTKEAAGATSKSAAKKAAAKKS
TAKKAAAKKSTAKKAAAKKSTAKKAAAKKSTAKKAAATKTAVNAKSTESTADDFDDDFDG
ELSDDFDNDLDGFEDVDLVDDEEVDGAEDLEGDTRVSAGAKGRASKAAKKAKSTKAGGGS
RSTTPEILEERRARLRQLIKLGKDRGYLTFSDINDTMSDDLVDTDAMDSIIGTFHEMGIK
VYDQAPSAEDLLLSDSNPISDDDDVEDEAEVALTTVDSDFGRTTDPVRMYMREMGQINLL
DREGEIEIAKRIEDGLKHMVMAIATYPSTIEEILSCFQKVRDGEATIDDYVDGLINDDGE
DYAGSGVTAEGEEAQTGAMSSKQIENLERKTLEKFTLIEQYFNNMKEEVEAGRRRSDVYL
KNQADMLEELVGIRFNAKMTESLCDKLREKMQSVRDLERSILATVVERVEMPRSEFISTF
HGNETNLEWVHEQLAKKPPYAEALERAIPDIQDDQKKILEIEEEIQMSVQELKEINRRML
NGENKAKKAKSEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMSRITRQILQETGAEPDPATIAAK
MDITEDRVRKILKIAKEPISMETPIGDDDDSHLGDFIEDTTTMSPEEASTYKSMQEVFDE
VLNSLTEREGKVLRMRFGIGLSSDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADK
LKSFLDSDSSNS
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaaatactgacaccacaaataaagttgttgccaaaaaagctgctgcaacagca
tccaagtctattgatgaggctaatactaatcaagaagtagttgcgacagaagcgtcaact
aaagaggcggctggagctacttctaaatcagctgccaaaaaagcggcagctaaaaaaagc
actgccaaaaaagcggcagctaaaaaaagcactgccaaaaaagcggcagctaaaaaaagc
actgccaaaaaagcggcagctaaaaaaagtacagcaaaaaaagccgcagcgactaaaaca
gctgtaaatgcaaaaagtacagaatcgactgccgatgacttcgatgacgacttcgatggc
gaattgtcagatgactttgataacgacttagacggttttgaagacgttgatctagtcgat
gatgaggaggttgatggtgctgaggatttagagggcgatacacgcgtctctgcgggtgca
aaaggtcgtgcttctaaggccgccaaaaaagcaaaatccaccaaggccggtggaggctct
cgttctacgaccccagagatactagaagagcgtcgtgctcgcttaagacagttaatcaag
cttggtaaggatcggggttatttaaccttcagtgatatcaatgacaccatgtctgatgac
ttggttgacactgacgcgatggatagtatcatcggcacgttccatgagatgggcattaag
gtgtacgatcaagcaccaagtgcagaagacctactattgagtgattccaatccgattagc
gatgatgacgatgtcgaagatgaagctgaagttgctttaacaacagtagattcggatttt
ggtcgtacgactgacccggtccgtatgtatatgcgtgagatggggcaaatcaatctttta
gaccgtgagggtgaaattgagattgctaagcgcatcgaagacggtttaaagcatatggtc
atggctattgctacctatccttctacgattgaagagattttgtcttgtttccaaaaagtg
cgtgatggtgaggctaccattgatgattatgtagatggtctaattaatgatgatggcgaa
gactacgcaggttcaggtgttactgctgaaggcgaagaggcacaaaccggtgcaatgagc
agtaagcagattgagaatcttgagcgaaagaccttggaaaaatttactctcatcgagcag
tacttcaacaacatgaaggaagaagttgaagcaggacgtcgccgttcagatgtttatctg
aaaaaccaagcagatatgcttgaggaattagtcggtattcgctttaacgctaagatgaca
gagtctttgtgtgataaattgcgcgagaagatgcaaagtgtgcgtgatttagagcgttcc
atcttggcgaccgttgtcgaacgtgtcgaaatgcctcgttcggagtttatttccactttc
catggtaatgaaactaatctagagtgggtacatgagcaattagctaagaaaccgccttac
gccgaagcgcttgaacgagcaattcctgatattcaggatgatcagaagaaaattctcgaa
atcgaagaagaaattcagatgtctgttcaagagcttaaggaaattaaccgtcgcatgctt
aatggcgagaataaagccaaaaaagcaaaaagcgagatgattcaggcaaacttgcgttta
gtgatttcaattgcgaagaaatatactaatcgcggtttacagttcttggatctgattcaa
gaaggtaatataggcttgatgaaagcagttgataagtttgaatatcgccgtggttataag
ttttcaacgtatgcaacttggtggattcgtcaggcgattactcgttcgattgcggaccag
gcacgtacaattcgtatccctgtgcatatgatcgaaacaatcaataagatgagccgtatc
acacgtcagattctccaagaaacaggtgccgagccggatccggcaaccatcgctgcgaaa
atggatattactgaggatagagttcgaaaaattctcaaaattgccaaagagccgatttcg
atggaaactccaattggcgatgatgatgattctcacttaggtgattttattgaagatacg
acaactatgtcacctgaagaggcgtctacttataagtcaatgcaggaggtgtttgacgag
gtgttaaactcactcacagagcgtgagggtaaggtccttcgtatgcgctttggtattggc
ttaagctccgatcaaacactagaagaagtaggtaagcagtttgatgtgactcgtgagcgt
attcgccagattgaagctaaagcgttacgtaaattgagacacccaagccgtgctgataag
ttaaagagtttcttagatagtgacagctctaattcgtaa
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