Oscillibacter valericigenes: OBV_02930
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Entry
OBV_02930 CDS
T01636
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ova
Oscillibacter valericigenes
Pathway
ova03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OBV_02930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ova03400
]
OBV_02930 (mfd)
Enzymes [BR:
ova01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OBV_02930 (mfd)
DNA repair and recombination proteins [BR:
ova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OBV_02930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAK97491
LinkDB
All DBs
Position
complement(281790..285320)
Genome browser
AA seq
1176 aa
AA seq
DB search
MEQLLKKLNELPELREAVSSLASGRSPVAVSGLQSAHRAVVGAAIAISMGRPAVFLCGDE
QEVRRLAGDLRTLTGAEPVILLGREWQFRAGAVSSRAWEQNRLAALYALAKGRVSVCIAT
ADALMTRTQPRKQLSAATKTLKVGERLDLNELSDQLSAAGYTRCEQVEGVGQFAVRGGIL
DVFSPLMSQPVRCELFDDEIDSMGVFDPGTQRRVKNIKSALLLPAAEVLPHQAPGGVAGL
AAALDKEAEKLEKKGRAAATAETLRADAARLRDGGALGGADRYLCAVYPEASWGVDYLPA
NAVVFLSETARVEERIKGFALQAKQDTEALLEAGVLAGAFSHLAMTGEELLSRLADFPTV
METSLPTSRYPIPPRALVNLTTKQLPSYGGSLETAAEDLKHYRAADYGVLILCGGEARAK
NLLRLLDERGVPAALDLKNAAMPAAGEVRLTAGALNAGSEWPQLRLAVLTEGQLAPAARK
RQKPKKDSNRQKLQSFTDLSPGDLVVHAQHGVGRFSGIRKMPVDGVEKDYIKIDYAAGDC
LYVPVTALDQVSKYIGGGENNEHTRLNKLGGTEWARSKSKAKAAAKDLAKGLIALYAARQ
KQPGFAFSPDSPWQQEFEDAFPYPETDDQLRAVEEIKADMERPRPMDRLLCGDVGYGKTE
VALRGVMKCVLDGKQAAILVPTTILAQQHYATAMSRFAGFPVNVEVLSRFTVSKEQKRIL
EATRTGGVDVLIGTHKLLQKSVQFKDLGLLVIDEEQRFGVTHKERLKEMAKQVDTLTLSA
TPIPRTLNMALSGLRDMSTIEEPPADRQPVQTYVLEHDWEIVADAIRRELGRGGQVYYLH
NRVESIDVTAGRIQKLLGPEARIAIGHGKMSEQELSDVMGRMVDGEVDVLVCTTIIETGI
DIPNVNTLVIEDADRMGLAQLHQIRGRIGRSTRRAYAYLTYRPGKILQENASKRLGAIRE
YVEFGSGFKIAMRDLEIRGAGNLLGPEQSGYMMSVGYDMYLKLLEEAVLEEKNEQPAQSA
ECTADLTVNAHLPERYVPSAEQRMDLYRRIAAIRTPEDSGEILDELMDRYGDPPKPVLAL
LDVALLRAAAQAAGVTDLSQKGDRLRLELGVFHPEALAAVCALPKYRQLLTLSAGDIPML
TMQLRPGTDVLETATALVEDLRLAADDTKEKENSHV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaacaactcctgaaaaaactgaatgagcttccggagctccgtgaggcggtctcaagc
cttgcaagcggccgaagtcccgtggcggtctccggcctccaaagcgctcaccgcgccgtg
gtcggcgcggcgattgccatatccatgggccgcccggcggtctttctttgcggcgacgag
caggaggtcaggcgcctggcgggcgatcttcgaaccctgacaggggcggagccggtgatt
cttctcggccgggaatggcagttccgggcgggggcggtatcctcccgcgcgtgggagcag
aaccgtcttgccgcgctgtatgccctggcaaagggaagagtctccgtctgcattgccacg
gcggacgcgctgatgacccggacacagccgcgaaaacagctctccgccgcgacgaaaact
ttgaaggtcggcgagaggctggatttgaacgaactgtcggaccagctatccgccgccgga
tacacccggtgcgagcaagtggagggcgtggggcagtttgccgtccgcggcgggattctg
gatgtgttctcgccccttatgagccagccggtgcgctgtgaattgttcgacgacgagatc
gactccatgggagtgtttgaccccggcacacagcggcgggtgaaaaacatcaaatcggcg
ctgttgctgcccgctgccgaggtgctgccccatcaggcccccggcggagtcgcgggcctt
gccgctgccttggacaaagaggcggaaaagctggaaaaaaaggggcgggctgccgcgact
gcggagaccctgcgggcagacgccgcccgactgcgggacggcggagccttaggcggcgcg
gaccggtatttgtgcgccgtgtatccggaggcgtcgtggggggtggactacctgcccgca
aacgcggtagtgtttttaagcgagacggcgcgggtggaggaacgcatcaagggctttgcc
ctgcaagccaagcaggacacggaggcgctgctggaagccggagtgctggcgggggcgttt
tcccatctcgccatgaccggggaggagctgctctcccgattggccgactttcccactgtg
atggagacgtctctccccacttcccgctatcccataccccccagggcactggtaaacctc
accacaaagcagcttccctcctatggcggcagccttgagaccgcggcggaggacttgaag
cactaccgggccgcggattacggcgtgctcattctctgcggcggcgaggcgcgggcaaaa
aacctcctacggctgctggatgagcggggcgttccggccgcgctggatctgaaaaacgcc
gccatgccagctgcgggcgaggtgcggcttaccgccggggcgctgaacgcgggcagcgag
tggccccagctccgtctggcggtgctgacggaggggcagctggcacccgcggcgcggaag
cggcagaagccgaaaaaggactccaaccggcagaaactccagtccttcaccgatctctct
cccggcgatctggtggtccacgcccagcacggcgtgggccggttttcgggcatccggaaa
atgccggtggacggcgtggagaaggactatatcaagattgactacgccgcgggggactgc
ctttacgtgccggtgacagcgctggatcaggtcagcaaatatatcggcggcggcgaaaac
aacgagcatacccggctgaacaagctgggcggcacggagtgggcccggtccaaatccaag
gcaaaagccgcggcgaaggacctggccaagggccttattgccctatatgccgcccggcag
aagcagcccggcttcgccttttcgccggattccccttggcagcaggaatttgaggacgcc
ttcccctatccggagacagacgatcagctccgggccgtggaggagatcaaggccgatatg
gagcggccccggcccatggaccgcctgctgtgcggcgacgtgggatacggcaagacggag
gtggctctccggggcgtgatgaaatgtgtgctggacggcaagcaggcggcgattctggta
cccaccaccattttggcccagcagcactatgccaccgccatgagccgcttcgccggcttc
cccgtaaacgtggaagtcttgtcccgattcacagtatccaaggagcagaaacggattctg
gaagccacccgcaccggtggagtggacgtgctgatcggcactcacaagctgctgcaaaaa
tctgtgcagttcaaagatctggggcttttggtcatcgacgaggagcagcggttcggcgtc
acccataaagaacgcctcaaggagatggccaaacaggtggatacgctcaccctctccgcg
acccctattccccggacgctgaacatggctttgtccggccttcgggacatgagcaccatc
gaggagccccccgcagaccgccagccggtgcagacctacgtgctggagcacgactgggag
atcgtggcggatgccattcgccgagaactgggccggggcgggcaggtatactaccttcat
aaccgggtggagtccatcgacgtcaccgcgggacggatccagaagcttctgggaccggag
gcccgcattgccatcggccacggaaagatgtcggagcaggagctctccgacgtgatgggc
cggatggtggacggtgaggtggacgttttggtgtgcaccaccatcatagaaacaggcatt
gatatcccgaacgtgaatacactggtgattgaggacgcggacaggatggggctggcccag
ctccaccagattcgcggccgcatcggccgcagcacccgccgggcttacgcatacctcacc
taccgcccgggcaaaattttgcaggagaacgccagtaagcgtctgggagctatccgggaa
tacgtggagtttggctccgggttcaaaattgccatgcgggatctggagatccggggcgcc
ggcaatctgctggggccggagcagtctggatatatgatgagcgtgggctacgacatgtac
ctaaagctcttggaggaggcggtactggaggaaaagaacgaacagcccgctcaatcggcg
gaatgcaccgccgacctgacggtgaacgcccatctccccgagcggtatgtcccctcggcg
gagcagcggatggacctgtaccgccgtattgccgccatccggacgccggaggactccggc
gagattctggacgaacttatggaccgctacggcgatccgcccaaacccgtactggcgctg
ctggatgtggcgcttttgcgggcggcggctcaggccgccggcgttaccgacctgagtcaa
aaaggcgaccggctgcgtctggagctgggcgtgttccacccggaggccctggcggcggtg
tgcgcactgcccaaataccggcagctgctgacgctcagtgccggagacatccctatgctg
acgatgcagctgcggcccggcacggacgtgctggaaacggcgacagcactggtggaggac
ctccgtctggcggcggatgatacgaaagaaaaggagaacagtcatgtctga
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