Opisthorchis viverrini (Southeast Asian liver fluke): T265_06756
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Entry
T265_06756 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03022
Basal transcription factors
ovi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
T265_06756
09124 Replication and repair
03420 Nucleotide excision repair
T265_06756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ovi03021
]
T265_06756
03400 DNA repair and recombination proteins [BR:
ovi03400
]
T265_06756
Transcription machinery [BR:
ovi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
T265_06756
DNA repair and recombination proteins [BR:
ovi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
T265_06756
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
20320935
NCBI-ProteinID:
XP_009170365
UniProt:
A0A074ZFD8
LinkDB
All DBs
Position
Unknown
AA seq
547 aa
AA seq
DB search
MHYWLPAFDRYLVIIGCLIQDFDKSELAFCRTGRISSLSIQCAVHTTVFHFLMNEPKAAS
IFEYIRNVDILLLDELFSHPPTCLVIFRELPELAKHFVARLLFVEQPIPKSIVSGWVEKG
SQALLQDACRALSDLRIWHSVDGNVARGAWCLSKKYQESLRISLFGGGKSLLGDLGSTTV
DKYSKDVGFLETYAAERWDSLLHFMVGSESSEVGSVVQDVLLLSNLMKGGTPDTPVGITK
HGFHFLLMSRPDQVRLFLLHYFDYLKETKKNLVAALQFVFQLSFLSPEKSYPVDALTAPQ
QEVLQQMRELGLAYQRKRTAPRFYVTPLATVLSGSRCHRPAMSSGSVLNAIPTGVSHLDG
TDSVQPTASSTSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDS
VREALIRGITADQIISFLTTNAHPDMLREPPILPPTLVDQIRLWELERDRFVFQEGCLYE
QFSKSADFEMVRDFAKSIGVLLWENPERRLMVVSKAGHEDTNLSRIADELNVHDIMGNMC
LTPCYGL
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgcattactggctaccggcattcgacagatacttggtcattattggttgtctgatccaa
gattttgacaaatcagagctcgccttctgccggaccggcagaataagttcactctccatt
cagtgtgcagtgcacactactgttttccactttctaatgaatgaaccaaaagcagcatca
attttcgaatacatccggaacgtggatattttgctgttggatgagttattctctcatcca
cccacgtgtctggtaatatttcgcgaactaccagagttagcaaaacactttgtcgcgcgg
cttctctttgttgagcaaccgatccccaaatccattgtttctggttgggtggaaaaaggt
tctcaggcactgttgcaagacgcctgtagggcactatcggatttgcgcatatggcattcg
gttgatgggaatgtcgccagaggagcctggtgtttgagcaaaaagtatcaagagtctctt
cgcatttctttatttggcggtggaaaatcattgcttggagatttgggttcgactacggtg
gataaatactcgaaagacgtgggcttcttagaaacctatgctgcagaacgctgggactcc
ctcttacatttcatggttgggtctgaatcttctgaagttggatcggtcgtgcaagacgtt
cttctgttgtccaatttgatgaaaggtggaacacctgatacacctgtcggaatcacgaaa
cacggatttcatttcttactcatgagtcgtcccgatcaggtccgcttgttcctcctgcac
tattttgactacctcaaggaaacaaagaaaaatttggtcgctgctctccagttcgtgttc
cagttgagcttcttgtccccggaaaagagctatccagttgatgcgttaactgctccccaa
caggaagtgcttcagcagatgcgcgaacttggtcttgcgtatcagcggaaacgtactgcc
ccgcgcttctatgtcacaccattggctaccgttctctctggatcccgatgccaccggcct
gcgatgtcttcaggttctgtcctcaatgccataccgacaggagtatcgcatctcgacggt
acagactctgtgcagccgaccgcgtccagcacaagtgatgtcggctacattttgctggaa
accaattttcgactttatgcttacacagattctcccctccgaacagccttactcagtttg
ttcagtaaaattcgtgcccgattcccgaatcttgtagtcgcagatatcacgcgtgactca
gttcgcgaggcactgatccgtggaatcacagctgaccagattatttccttcttgacaaca
aatgctcatccggatatgcttcgtgagcctcctattctcccgcccacgctggtcgaccaa
attcgtctatgggaattggaacgagatcgtttcgtatttcaagaaggctgtctttatgaa
cagttctcgaaaagtgcagactttgaaatggtccgagactttgcaaagagcattggtgtt
cttttgtgggagaatcccgaacgacgcttaatggttgtttccaaagccggacatgaagac
acgaatttatcgaggattgctgacgaactgaacgtccatgacataatggggaacatgtgt
ttgacgccgtgctacggtttatga
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