Paracoccus sp. AK26: FIU66_17355
Help
Entry
FIU66_17355 CDS
T08451
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paak
Paracoccus sp. AK26
Pathway
paak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FIU66_17355 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paak03400
]
FIU66_17355 (ligD)
Enzymes [BR:
paak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FIU66_17355 (ligD)
DNA repair and recombination proteins [BR:
paak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FIU66_17355 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Pepdidase_M14_N
Motif
Other DBs
NCBI-ProteinID:
QIR87043
UniProt:
A0A6G9WD99
LinkDB
All DBs
Position
pAK1:complement(355157..357664)
Genome browser
AA seq
835 aa
AA seq
DB search
MAGSSGAGLETYNQKRDFTQTAEPPGRKAGKTGRSFVIQKHAATRLHYDLRLEMDGVLKS
WAVTRGPSLVAGEKRLAVHVEDHPLDYADFEGTIPKGNYGAGAVIVWDRGDWTRVDGDYA
KGKLEIELKGEKLSGRWHLVRMRPKRGETRENWLLIKSEDAAARPPDAPDILSERPESIQ
TGRTVEDVANGAEAPSRPAKPPAAPRRKRRAKADAPAAKAAPSAMPDFVEPALATLKPSP
PTGPKWLHEVKFDGYRLQARLEGTKVRLLTRSGLDWTDRFGPDIPDALRALPAQQALIDG
ELVVESGAGASDFSALQADLSAGRNDRFVFYVFDLLYLDGQDLRDAPLIERKGILEDLVG
PEPGRVRFSAHFGETGSMVLRHACRLSLEGIISKEADAPYRSGRGKSWIKSKCSARQEFV
VAGFLPSTTSDKLVGSLALGVYEDGKLDYVGRVGTGFSAAVAEDLRSRLEEMRIDKSPFV
RKLTADEARGVQFVHPELVAEVEFRAWTADGLLRHASFRGLREDKPAADVVRESGPAGAA
PKAQKRRVALTHPDRIYWPDEGITKEGLADYYAQVWTRIAPFIVGRPLALLRCPSGITGQ
RFFQKHAWRGISKHIAQVKDPKAKDEEAMVAVNDLDGLMALVQSATLEIHPWGSTVADWD
RPDTITMDLDPGEGVAWGAIIAAAEEVRQRLQDAGLAAFVKTSGGKGLHVVAPLRPKADW
PTVKAFTKGLAEAMAADSPDDYVATITKSKRKGRILIDYLRNQRGMTAVAAYSTRARPGA
ALSMPVAWEELDQIGPAYFTVTNTPARLDDLAHDPWEDFRTAARPLEGKARRGKA
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcgggatcgtcgggggcgggcctggaaacctataaccagaagcgcgacttcacgcag
acggccgaaccccccggtcgcaaggcgggcaagacgggccgctctttcgtgatccagaag
cacgcggccacccggctgcattacgacctgcggctggaaatggacggcgtgctgaaaagc
tgggccgtgaccagggggcccagcctggtcgccggcgagaagcgcctggccgtccatgtc
gaggatcatccgctggactatgccgatttcgagggcacgatccccaagggcaattacggc
gcgggcgcggtgatcgtctgggaccggggcgactggacccgggtcgacggggactatgcc
aagggcaagctggaaatcgaactgaagggggaaaagctgtcgggtcgctggcatctggtg
cggatgcgtcccaagcgcggcgagacgcgcgagaactggctgctcataaagtccgaggat
gccgctgcccgcccccccgacgcaccggatattctgtccgagcgcccggaatccatccag
accggacgcacggtcgaggatgtggccaacggcgccgaggccccgtcgcggcccgccaag
ccccctgccgcgccgcgccggaagcgccgcgccaaagcggatgccccggcggcaaaggca
gcgccgtcggccatgcccgatttcgtcgaaccggccctcgcgacgctgaagccgtcgccg
cccacgggcccgaaatggctgcacgaggtcaagttcgatggctatcgcctgcaagcccgg
ctggagggaaccaaggtccggttgctgacccgcagcgggctggactggaccgaccgcttc
ggtcccgacatcccggatgcgctgcgcgccctgccggcccagcaggcgctgatcgacggc
gaactggtggtcgaatccggggcaggggcctcggacttctcggccttgcaggcggatctg
tccgccgggcgcaatgaccgcttcgtgttctatgtcttcgacctgctttacctggacggc
caggaccttcgcgacgcgccgctgatcgagcgcaaggggatcctggaggatctggtgggc
ccggaacccggccgcgtccgtttcagcgcccatttcggggaaaccgggtcgatggtgctg
cgccacgcctgtcggctgagcctggaagggatcatctcaaaggaagccgatgcgccttat
cggtcggggcgggggaaaagctggatcaagtccaaatgctcggcccggcaggaattcgtg
gtggcgggctttctgccctcgaccacctcggacaagctggtcggatcgctagccctgggt
gtctacgaggacggcaagctggattatgtgggccgcgtcggcaccggcttttcagccgcc
gtggccgaggatctgcgcagccgcctggaggaaatgcgcatcgacaagagcccctttgtc
cgcaagctgaccgccgacgaggcgcggggcgtccagttcgtgcaccccgaactggtggcc
gaggtcgagttccgcgcctggaccgccgacggccttctgcgccacgcctcgttccggggg
ctgcgcgaggacaagccggcagccgacgtggtgcgtgaaagcggccccgccggggcggcc
cccaaggcgcagaagcgccgggtggccctgacccatcctgaccgcatctattggcccgac
gaggggattacgaaggaggggctggcggattactatgcccaggtctggacccggatcgcg
ccctttatcgtcggccgcccgctggcgcttctgcgctgccccagcggcatcaccgggcag
aggttcttccagaaacacgcctggcgcgggatcagcaagcatatcgcccaggtcaaggat
cccaaggccaaggacgaggaagcgatggtcgccgtcaacgacctggacgggctgatggcc
ctggtgcagtcggcgacgctggaaatccatccctggggatccaccgtcgcggactgggac
cggcccgacaccatcaccatggatctggatccgggcgaaggagtggcctggggcgcgatc
atcgccgccgccgaggaggtccggcagcggctgcaggacgcgggccttgcggctttcgtc
aagacatcgggcggcaagggcctgcacgtggtggccccgcttcggcccaaggccgactgg
cctacggtcaaggccttcaccaagggcttggccgaggcaatggccgcagattcccccgat
gattacgtggcgaccatcaccaagtccaagcgcaaggggcgcatcctgatcgactatctg
cgcaatcagcggggcatgacggcggtcgccgcctattcgacccgcgcccgccccggcgcc
gccctgtccatgccggtcgcgtgggaggaactggaccagatcggtcccgcctatttcacc
gtgaccaacacgccggcgcggctggacgaccttgcccatgacccgtgggaagatttccgc
actgccgcccgtccgctggaaggcaaggcaaggcgcggcaaggcctga
DBGET
integrated database retrieval system