KEGG   Paracoccus sp. AK26: FIU66_17355
Entry
FIU66_17355       CDS       T08451                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
paak  Paracoccus sp. AK26
Pathway
paak03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:paak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FIU66_17355 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:paak03400]
    FIU66_17355 (ligD)
Enzymes [BR:paak01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FIU66_17355 (ligD)
DNA repair and recombination proteins [BR:paak03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FIU66_17355 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S mRNA_cap_enzyme Pepdidase_M14_N
Other DBs
NCBI-ProteinID: QIR87043
UniProt: A0A6G9WD99
LinkDB
Position
pAK1:complement(355157..357664)
AA seq 835 aa
MAGSSGAGLETYNQKRDFTQTAEPPGRKAGKTGRSFVIQKHAATRLHYDLRLEMDGVLKS
WAVTRGPSLVAGEKRLAVHVEDHPLDYADFEGTIPKGNYGAGAVIVWDRGDWTRVDGDYA
KGKLEIELKGEKLSGRWHLVRMRPKRGETRENWLLIKSEDAAARPPDAPDILSERPESIQ
TGRTVEDVANGAEAPSRPAKPPAAPRRKRRAKADAPAAKAAPSAMPDFVEPALATLKPSP
PTGPKWLHEVKFDGYRLQARLEGTKVRLLTRSGLDWTDRFGPDIPDALRALPAQQALIDG
ELVVESGAGASDFSALQADLSAGRNDRFVFYVFDLLYLDGQDLRDAPLIERKGILEDLVG
PEPGRVRFSAHFGETGSMVLRHACRLSLEGIISKEADAPYRSGRGKSWIKSKCSARQEFV
VAGFLPSTTSDKLVGSLALGVYEDGKLDYVGRVGTGFSAAVAEDLRSRLEEMRIDKSPFV
RKLTADEARGVQFVHPELVAEVEFRAWTADGLLRHASFRGLREDKPAADVVRESGPAGAA
PKAQKRRVALTHPDRIYWPDEGITKEGLADYYAQVWTRIAPFIVGRPLALLRCPSGITGQ
RFFQKHAWRGISKHIAQVKDPKAKDEEAMVAVNDLDGLMALVQSATLEIHPWGSTVADWD
RPDTITMDLDPGEGVAWGAIIAAAEEVRQRLQDAGLAAFVKTSGGKGLHVVAPLRPKADW
PTVKAFTKGLAEAMAADSPDDYVATITKSKRKGRILIDYLRNQRGMTAVAAYSTRARPGA
ALSMPVAWEELDQIGPAYFTVTNTPARLDDLAHDPWEDFRTAARPLEGKARRGKA
NT seq 2508 nt   +upstreamnt  +downstreamnt
atggcgggatcgtcgggggcgggcctggaaacctataaccagaagcgcgacttcacgcag
acggccgaaccccccggtcgcaaggcgggcaagacgggccgctctttcgtgatccagaag
cacgcggccacccggctgcattacgacctgcggctggaaatggacggcgtgctgaaaagc
tgggccgtgaccagggggcccagcctggtcgccggcgagaagcgcctggccgtccatgtc
gaggatcatccgctggactatgccgatttcgagggcacgatccccaagggcaattacggc
gcgggcgcggtgatcgtctgggaccggggcgactggacccgggtcgacggggactatgcc
aagggcaagctggaaatcgaactgaagggggaaaagctgtcgggtcgctggcatctggtg
cggatgcgtcccaagcgcggcgagacgcgcgagaactggctgctcataaagtccgaggat
gccgctgcccgcccccccgacgcaccggatattctgtccgagcgcccggaatccatccag
accggacgcacggtcgaggatgtggccaacggcgccgaggccccgtcgcggcccgccaag
ccccctgccgcgccgcgccggaagcgccgcgccaaagcggatgccccggcggcaaaggca
gcgccgtcggccatgcccgatttcgtcgaaccggccctcgcgacgctgaagccgtcgccg
cccacgggcccgaaatggctgcacgaggtcaagttcgatggctatcgcctgcaagcccgg
ctggagggaaccaaggtccggttgctgacccgcagcgggctggactggaccgaccgcttc
ggtcccgacatcccggatgcgctgcgcgccctgccggcccagcaggcgctgatcgacggc
gaactggtggtcgaatccggggcaggggcctcggacttctcggccttgcaggcggatctg
tccgccgggcgcaatgaccgcttcgtgttctatgtcttcgacctgctttacctggacggc
caggaccttcgcgacgcgccgctgatcgagcgcaaggggatcctggaggatctggtgggc
ccggaacccggccgcgtccgtttcagcgcccatttcggggaaaccgggtcgatggtgctg
cgccacgcctgtcggctgagcctggaagggatcatctcaaaggaagccgatgcgccttat
cggtcggggcgggggaaaagctggatcaagtccaaatgctcggcccggcaggaattcgtg
gtggcgggctttctgccctcgaccacctcggacaagctggtcggatcgctagccctgggt
gtctacgaggacggcaagctggattatgtgggccgcgtcggcaccggcttttcagccgcc
gtggccgaggatctgcgcagccgcctggaggaaatgcgcatcgacaagagcccctttgtc
cgcaagctgaccgccgacgaggcgcggggcgtccagttcgtgcaccccgaactggtggcc
gaggtcgagttccgcgcctggaccgccgacggccttctgcgccacgcctcgttccggggg
ctgcgcgaggacaagccggcagccgacgtggtgcgtgaaagcggccccgccggggcggcc
cccaaggcgcagaagcgccgggtggccctgacccatcctgaccgcatctattggcccgac
gaggggattacgaaggaggggctggcggattactatgcccaggtctggacccggatcgcg
ccctttatcgtcggccgcccgctggcgcttctgcgctgccccagcggcatcaccgggcag
aggttcttccagaaacacgcctggcgcgggatcagcaagcatatcgcccaggtcaaggat
cccaaggccaaggacgaggaagcgatggtcgccgtcaacgacctggacgggctgatggcc
ctggtgcagtcggcgacgctggaaatccatccctggggatccaccgtcgcggactgggac
cggcccgacaccatcaccatggatctggatccgggcgaaggagtggcctggggcgcgatc
atcgccgccgccgaggaggtccggcagcggctgcaggacgcgggccttgcggctttcgtc
aagacatcgggcggcaagggcctgcacgtggtggccccgcttcggcccaaggccgactgg
cctacggtcaaggccttcaccaagggcttggccgaggcaatggccgcagattcccccgat
gattacgtggcgaccatcaccaagtccaagcgcaaggggcgcatcctgatcgactatctg
cgcaatcagcggggcatgacggcggtcgccgcctattcgacccgcgcccgccccggcgcc
gccctgtccatgccggtcgcgtgggaggaactggaccagatcggtcccgcctatttcacc
gtgaccaacacgccggcgcggctggacgaccttgcccatgacccgtgggaagatttccgc
actgccgcccgtccgctggaaggcaaggcaaggcgcggcaaggcctga

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