Pyrococcus abyssi: PAB2039
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Entry
PAB2039 CDS
T00024
Name
(GenBank) Radical SAM family protein
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
pab
Pyrococcus abyssi
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pab03016
]
PAB2039
Enzymes [BR:
pab01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
PAB2039
Transfer RNA biogenesis [BR:
pab03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
PAB2039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Wyosine_form
Radical_SAM
Fer4_12
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
CAB49390
UniProt:
Q9V1F9
LinkDB
All DBs
Position
complement(450330..451358)
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AA seq
342 aa
AA seq
DB search
MREMITIKPGKITVQANPNMPEEVANLFRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYK
QKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMETFLGTELPQPWDDPEFIVEESIKAQRK
LLIGYKGNPKVDKKKFEEAWEPKHAAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGT
VPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERIMRFLELMRDLPTRTV
VRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAE
ALVKHLPGYHIEDEYEPSRVVLIMRDDVDPQGTGVNGRFIKH
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
gtgagggagatgataacgataaagcccggaaagattaccgttcaagctaaccccaacatg
cccgaggaagttgcgaacctgtttaggaagcaacactacgagatagtgggaaggcacagc
ggggttaagctgtgtcactggttaaagaagagcctaacggaggggagattctgctacaag
cagaagttctatggaatacactctcataggtgccttcagatgactccagtcctagcttgg
tgcactcacaattgtatattctgctggagaccaatggagacattcctgggaactgagcta
cctcagccttgggatgacccagagttcatagtggaggagagcataaaggctcagagaaag
ctcctaatagggtacaaaggaaatccaaaggttgacaagaagaagttcgaggaagcctgg
gaaccgaagcacgcggcaataagcctatctggagagccaatgctttatccatacatgggg
gacttggttgaggagttccacaagaggggattcacaaccttcatagttaccaacggaaca
gttccagaaaggctggaagagatgataaaggaggacaagctaccgacccagctctacgtc
tcgataactgctcccgacatagagacctacaactcagttaacataccaatgattccggac
ggctgggagaggataatgaggttcctcgaattgatgagggacttacctactagaacagtc
gtcaggctaaccctggttaagggggagaacatgcacagtccagaaaagtacgcgaagcta
atactaaaggccagaccgatgttcgtcgaggctaaggcctacatgttcgtaggttactca
aggaacagattaacgattaacaacatgccaagccatcaagacataagggagttcgctgaa
gccctagttaagcacctcccaggatatcacatagaagatgaatacgagccgagtagagtt
gtcttgataatgagggacgacgttgacccccagggaaccggggttaatggaaggttcata
aagcactaa
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