Pajaroellobacter abortibovis: BCY86_08305
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Entry
BCY86_08305 CDS
T09833
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pabo
Pajaroellobacter abortibovis
Pathway
pabo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pabo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCY86_08305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabo03400
]
BCY86_08305
Enzymes [BR:
pabo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCY86_08305
DNA repair and recombination proteins [BR:
pabo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCY86_08305
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APS00676
UniProt:
A0A1L6MYU2
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All DBs
Position
1683323..1687063
Genome browser
AA seq
1246 aa
AA seq
DB search
MNRNLSLSFNEVTASSLREIVNRIQTPPNARIALTGVEGGTEALLIATAARTLDRPLVMI
TPDAEASQQTVDDLTFFLSSGKRKGPNGENHPILTLPAYESPPYADVNPDRRIMMERLAT
YFFLLHSFSWKVLVLSAVDLARKGIPRSVFKSYCEAIRIEEEIHPSALTERLKAKGYLSV
PLVEDPGCFVLRGSLLDIWPPQSPSPLRVELYENLVLSIKEFDPIEQKIRTQQGADQEHP
LLWLPPAREAIIDCKTIPYAKEQVRQLADHIDWPTTKTRALMEDVISGRPFFGSDSFLPA
YYESLDPLFDYLPSDSLFFLQDPTSVSEALEQESKRVVESIDAKNGTPCFPISAFYQERK
EIAKQFDQRATVLIYNRSTNRLENGDSEKQTDTRVQDQRILFRPCQATFDIGSTNQESLS
KSMREARASKEKTSPIFPLVQRILEWHEQGLSVCCAARSQIQAERIISLLSHQEVTCCIR
TETREYLALHQSKEKQKVQVAIGPLSRGFILPSEQVVWITEEEIFGAPVHASQSSKEREK
TALSPFLEDLRSLKIGDYVVHTEHGIGQYQGLIHREVVGILVDLLCIEYAGGDKLYLPVY
RLNQIQKWGGGGHGAPPLDRLGGSTFAKAKGRARKEVRQIADELFRLHAERQARPGYALP
PLDDEDRAFEATFPFDETPDQAKAIREVYKDLESPQPTDRLVCGDVGFGKTEVAIRAAFR
MVKANKQVALLCPTTVLAQQHLRTFENRFRDYPFTVKALSRFQSDKEQNATIAQLKEGKI
DLIIGTHRLLSKDVHFKDLGLLIIDEEQRFGVVHKERLKKLRAHVDILTLTATPIPRTLQ
MAVSGLRELSLITTPPTDRRTIRTIVTRFEPHVLKDAIEREIARGGQVFYVYHRAEGLYE
KAQQLQELLPHARIAVCHGQLGRSRRTPASEAIKQEGTKEGGLLEKVMLDFIEGRYDILV
ATTIIESGLDIPQANTMIIDRADLFGLAQLYQLRGRVGRSKERAYCYLIVPPPNAMTDDA
RARIEALERYTELGSGFQIASLDLELRGAGSLLGVEQSGNIASVGFDLFCHMLEEAVLEL
RGETLVEEVDPELSLDLPALLPEEYVGDMGIRLSFYKRFAGAPDEAAVTDIAEELEQRFG
PLPEEAKNLVQLMMIKTHMRKIKALGCEANARMVTLHLRSDTSLDPQKVTALIRRHPHLY
RLTPDMRLSRRFENSHDSNGLINAQTLLEELKGCHKDNPTNNLMII
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgaaatctctcactttctttcaacgaagtcactgcttcttcgcttcgggagatt
gtcaatcgcatccaaacccctccaaacgcccggatagcgctgacaggagtcgagggagga
acagaggcactgctcatcgccactgccgcgcgcacactggaccggcccctggtgatgatc
acccctgatgctgaagcaagccaacagacagtagacgacctcacgttctttctctcaagc
ggcaaaaggaaggggcctaacggcgaaaaccatcctatcctcacactacccgcctatgaa
tcacccccttatgccgatgtcaatccagatcgtcggattatgatggaacgacttgccacc
tattttttcctcctccactctttttcttggaaagtgcttgtcctatcggctgtggacctg
gcacgcaaagggatccctcgttctgtttttaagtcctactgtgaagcaatccgaatcgaa
gaagaaatccatccctctgcactcaccgagcggctcaaggcgaaaggatacctgtccgtc
ccacttgtcgaagatcctggctgttttgtcctacgcggctctctgctagatatatggccc
cctcaatccccctcacctcttcgcgtggagctgtatgaaaatctcgttctctccatcaaa
gagttcgatccgatcgaacaaaagatccggacgcagcaaggcgcagatcaagaacacccc
ctgctgtggctcccccccgcacgagaagcaattatcgactgcaagaccatcccctatgca
aaagagcaggttcggcagcttgccgaccatatcgattggccgaccacaaagacgcgagcc
cttatggaagacgtcatcagcggacgtcccttctttggatcggacagtttcttgcccgcc
tactacgaatcgctggatcccctctttgactatctcccctccgattccctctttttccta
caggatccgacctccgtctcggaagcattagaacaagagtcaaaacgggtcgtggaaagt
atcgacgccaaaaatggaaccccatgtttccccatcagtgccttttatcaagagagaaaa
gagattgccaaacaatttgatcagagggcaaccgtcctgatctacaaccgatcgacaaac
cgtttagaaaatggcgattctgaaaaacagacagatacgcgggtgcaagaccagaggatt
ctatttagaccctgccaggccacctttgacataggatcaacaaatcaagaatccctctca
aaatcgatgcgagaagctcgtgcttccaaagagaaaacttcccccattttccctctggtt
cagcgtattctcgaatggcatgaacaggggttatccgtttgctgtgcagcgcgctctcaa
attcaggcagagcgcataatctctctcctgagtcatcaagaagtcacatgctgcatccgc
accgaaactagagaatatctagcactgcaccaaagcaaagagaaacaaaaagtccaggtg
gcaataggccctctctcccgcggattcatcctacccagtgagcaagtggtctggattaca
gaagaagaaatctttggcgccccagttcacgcctcacaatcttctaaagaaagagaaaaa
accgccctttccccttttctagaagatctgcgctctctcaaaatcggagattacgtagtc
catacagaacacggaatcggccagtatcaaggcctcattcacagagaagtcgttggtatt
ctggtcgatcttttgtgtatcgaatatgcaggaggagataaattatatctccccgtctac
cgtctcaaccaaatccaaaaatggggtggagggggacacggagcccctcccctcgatcgg
ctgggcgggtctacgtttgctaaagccaaaggaagggccaggaaggaagtccgtcagatc
gcagatgagctcttccggctccacgcagaacgacaggctcgtccagggtatgcccttcca
cccctagacgatgaagacagagcatttgaagcaacattccccttcgatgagacccctgac
caagcgaaagcaattcgagaagtgtacaaggatttagaatctccccaaccgaccgaccgg
ttggtctgcggagatgttggctttgggaaaacggaagtagcgatccgcgctgcctttcgt
atggtcaaagccaacaagcaggttgcccttctgtgtccgacgacagtgctggctcaacag
cacctgcgcacgtttgagaaccgatttcgtgactatccgtttacggtcaaagcactcagc
cgctttcagtccgataaggaacaaaatgcaaccatcgcacaactcaaggaagggaaaatt
gatctgatcattgggacccaccgcctcctttcgaaggacgtccacttcaaagatctgggg
ttgctgatcatcgatgaagaacagcgctttggcgttgtccacaaagagcggctcaagaaa
ttgagagctcacgttgacatcctgacgctaaccgctactccaatcccccgtactctccag
atggcagtcagtgggctacgggaactctccttgatcaccaccccccccaccgatcggcgt
actatccggacaatcgtgactcgattcgaacctcatgttctcaaggatgcgatcgaacgg
gagatcgctcgcggtggacaagtattctacgtctaccaccgggcggaagggctatatgaa
aaggcccaacagctgcaagagctccttcctcacgcgcggatcgcagtatgccatggccaa
ctcggacggagccgtagaacccctgcttctgaagcgatcaaacaggaagggacaaaagaa
ggggggctcctagaaaaagtgatgctcgatttcattgaggggcgttacgatattctcgta
gcgaccacaatcatagaaagcggcctcgatattccacaggccaacactatgatcatcgat
cgggcagacctctttggattagcccaactttaccagctgcgaggtcgcgtcggtcgttcc
aaagaacgcgcttactgctatttgatcgttccacctcctaatgccatgacggacgacgcc
cgtgcccgtatcgaagccctagaacgctacacagaactgggaagcggatttcagatcgcc
tctctcgatctagaactccgtggggcaggtagcttattgggagtagaacaatccggcaac
atcgcaagcgttggatttgacctgttctgccacatgctcgaagaagccgtcctagaatta
aggggagaaactctggttgaggaagttgatcctgaactttccctcgatcttcctgccctc
ctccctgaagagtatgtcggagatatggggatccgtctatccttttacaagcgcttcgca
ggcgcccccgatgaagccgctgtcaccgacattgccgaggaactagaacaacgtttcggg
ccccttcctgaagaagcgaagaatttggttcagctgatgatgatcaaaacccacatgcgc
aaaatcaaagccttaggctgtgaagccaatgcacgaatggttactctccacctccggtca
gatacctcgctcgacccccagaaagtgacggcgctcatccgccgtcaccctcatctgtac
cgtctcacccccgacatgcggctctcccgccgctttgaaaacagtcacgacagcaatggg
ctcattaacgctcaaaccctcctcgaagaactcaaaggctgccataaagacaacccaaca
aataacttaatgattatttag
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