Polycladomyces abyssicola: JIR001_16230
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Entry
JIR001_16230 CDS
T07192
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pabs
Polycladomyces abyssicola
Pathway
pabs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JIR001_16230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabs03400
]
JIR001_16230
Enzymes [BR:
pabs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JIR001_16230
DNA repair and recombination proteins [BR:
pabs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JIR001_16230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF1725
Motif
Other DBs
NCBI-ProteinID:
BCU81840
UniProt:
A0A8D5ZMM8
LinkDB
All DBs
Position
1610284..1611186
Genome browser
AA seq
300 aa
AA seq
DB search
MGVKEKRTIRVEGKELTISNPDKMMYPEDGITKWSYLLYLTRLAPWMLPHCRGRWLTTIR
FPDGVHGKSFYQKNVPSHAPDWVRTAAWNEVEYILLEDTATLAWLANLACLEFHLSFDRV
DAPDLPPELVFDLDPSAPPFEKVVEVALYTKEVLDGMGLSSYVKTSGATGLQVYVPIRRR
YTFDDTRRVSRFVAMYLAQKYPRLITIERTVKNRGDKVYFDYLQHWRGKSLIAPYSPRAR
KGAPVSTPLTWEELKKGVRPEQFTLATIHGRLTEKGDLFAVMLTEDSRHDLTDILKWIPK
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgaaagagaaacgcacgattcgtgtggaaggaaaagaactgacaatttccaat
ccggacaaaatgatgtatcccgaggatggcatcaccaaatggtcgtatctgttgtacctg
acacgattggcgccgtggatgttgccccattgccgcggaagatggttgacgacgattcgt
tttccggacggggtgcatgggaaatcgttttatcaaaaaaatgtgccgtcccacgctccc
gactgggtgcgcaccgccgcttggaacgaggtggaatacatactcttggaagatacggcc
acgttagcgtggctggccaatttggcgtgtttggagtttcacctatcgttcgaccgcgtg
gacgccccggacttacctcccgaactcgtgtttgacttggacccgtccgccccgccgttt
gaaaaagtggtggaagtggcgctttacaccaaagaagtattggacggcatgggactgtcg
tcgtatgtcaaaacgtcgggagcgacaggactgcaggtttacgtgccgatccgtcgccgt
tacacttttgatgatacgcgcagggtaagtcggtttgtcgcgatgtatctcgcccaaaaa
tatccgcgtttgatcaccatcgaacggacggtgaaaaacaggggagacaaagtttatttt
gattacttgcaacactggcgcggcaaatccctgatcgccccatattcaccccgcgcacgt
aaaggtgcaccggtatccactccgctgacatgggaagaattgaaaaagggcgttcgtcct
gaacagtttacgctggctaccattcatgggcgtctaacggaaaaaggggatttgttcgcc
gtgatgcttacagaagattcgcggcacgatctgaccgatattttgaaatggatacccaag
taa
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