Pectobacterium actinidiae: M9782_17940
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Entry
M9782_17940 CDS
T08879
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pacb
Pectobacterium actinidiae
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pacb03009
]
M9782_17940 (srmB)
Enzymes [BR:
pacb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M9782_17940 (srmB)
Ribosome biogenesis [BR:
pacb03009
]
Prokaryotic type
rRNA helicases
M9782_17940 (srmB)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WEF11054
LinkDB
All DBs
Position
4097275..4098600
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AA seq
441 aa
AA seq
DB search
MTVTNFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTLLFSATLEGDAIKDFAERLLNDPVEIESDPSRRERKKILQWYYRADDLKHKTALLC
HQLKQPDVTRSIVFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVN
VLVATDIAARGIDINDVSHVFNFDLPRTSDTYLHRIGRTGRAGRKGCAISFVEAHDHLLL
GKISRYLNEPLKPRVIEELRPETKAPSAKTTGKPSKKVLAKRQEKKEKEKEKVKVKVRHR
DAKNIGKRRQPTQKTDEPSAK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgagctcgatcttgatgaaagcctgttagacgccctgcgt
gacatgggctacgagcgcccgaccgtaattcaggctgaggcgatccctccagcgatggaa
ggccgcgacgtattaggctcagcgccaacaggaacaggtaaaaccgccgcctatctgctg
ccggttttgcagcatcttatcgatttccctcgtaaaaaatcgggtccacctcgtattctg
atcctcacgccaacccgtgaactcgccatgcaggtggccgatcaagcgcgagcgtttgct
gcacatacgcatctggatatcgccacgatcactggcggcgtggcctacatgaaccatgcg
gaagtcttcagtgaaaatcaggatatcgtcgttgcaacgacgggccgtctgctgcaatac
attaaagaagaaaacttcgattgccgcgcggtagaaacgctcattctggatgaagcagac
agaatgctggatatgggctttgcccaggatattgaacacattgcgggagaaacccgctgg
cgcaagcaaacgttgctgttttctgcgacgctggaaggggacgcgatcaaggatttcgcc
gagcgtctgctcaacgatcccgttgaaatcgaatctgacccatcgcgtcgggagcgtaaa
aaaattctgcaatggtattaccgcgccgacgatcttaaacacaaaacagcgctactctgc
catcagttaaaacagccggacgttacgcgttctatcgtctttgttcgcaagcgtgagcgc
gtgcatgagctggttgcctggctgcgtgaagcgggcattaactcctgctatctcgaaggc
gaaatggtgcaagctaaacgtaatgaggcgatcaaacgtctcagcgacgggcgtgtcaac
gtgctggtagcaacggatatcgcagcgcgtggtattgatattaacgatgtcagccacgta
tttaacttcgatttaccgcgcacctcggacacctatcttcaccgtattggccgcaccggt
cgcgccggtcgtaaaggttgtgccatctcttttgtcgaagcacacgaccatctgctgctg
gggaaaatcagtcgctacctgaatgaaccgctaaaaccgcgcgtcattgaggaactccgc
ccagagacgaaagcaccaagcgccaaaacgacggggaaaccgtcgaaaaaagtgctggct
aagcggcaagagaaaaaagagaaggaaaaagaaaaggttaaggtaaaagttcgccatcgc
gatgctaaaaatattggtaagcgccgtcaaccaacgcagaaaaccgacgaaccgtctgcc
aaataa
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