Cutibacterium acnes C1: PAC1_02805
Help
Entry
PAC1_02805 CDS
T02330
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pacc
Cutibacterium acnes C1
Pathway
pacc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pacc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PAC1_02805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacc03400
]
PAC1_02805
Enzymes [BR:
pacc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAC1_02805
DNA repair and recombination proteins [BR:
pacc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PAC1_02805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
Glyco_tran_WecG
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFU40329
LinkDB
All DBs
Position
593213..596839
Genome browser
AA seq
1208 aa
AA seq
DB search
MVSVGTTTYPMLVTFGGLTSLLSREPVLSHVVEDALTRRTPTLDLQVAASARPAVAAVLG
RSLDGSGRLPVLLVTSTFREAEESVATLKTWLGADAVCYYPSWETLPHERLSPRTDTVGR
RMEVLRRLCGTEGEVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVNA
AYSRVDMVERRGEFAVRGGIVDVFPPVLEHPVRIDFFGDEIEEMTSFAVADQRSTDETHQ
ELICAPCRELILTDEVRSRAKALLTDHPELADMLERIGNGQAVEGMEALMPALVDEMELL
VDVLPEHAMVVLSDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQAPIDLAASGYRSLAQ
VRSHCLERGMAWWSMSSFSLDSSATDVLVDDDITSAPQTVNPQLVAVEPWHGDVEAAVKD
LTARLDDGWTVLLCAEGEGMAKRMSELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHG
FAAESVKLLVASTGDLAESQDPGGTGERRMPRRRRNQIQPLELKPGDLIVHEQHGVGRYV
EMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDW
RKRKARARKAVREIAAELIKLYAARQATKGHAFGPDTAWQRELEGAFAYVETPDQLTTIA
DVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFQTFT
ERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLVIVDE
EQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTFA
GPYDEGQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQL
EQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQLRGRVGRSRERG
YAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNLLGGEQSGHIADV
GFDLYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETERLRLEMYKRLAEVR
SDEEVDAIGAELVDRYGPMPEPVQALLGVARFRLLCRQAGIHEVVPAGRNIRFSPVNLPE
SRVMRLKRLYPGSVVKQTAGLVLVPKPMTATIGGQPLGGADLLKWSADLVTNVLAVDTPI
GAGRPTEP
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtgtcggtaccaccacgtaccctatgttggtgacttttggcggactgacctcc
cttctttcccgcgaaccggtgctctcccatgttgtggaggacgcccttacccggcgcact
cccacccttgaccttcaggtggcagcttcggcccgcccggcggtggcagccgtactgggc
cggtctctcgacggttccggacgtctgccagtattactcgtgacgagcacgttccgagag
gccgaggaatcagttgctaccttgaagacgtggctcggcgccgacgctgtctgttactac
ccatcgtgggagaccttgcctcatgagcgtctgagcccgcgtacggacaccgtcggtcga
cgcatggaggtgctgcgtcggctgtgtggtaccgagggtgaggtaccacaggtggtggtc
gccccggtgcgctccttgctgcagcctcaggttgccggtctgggacgcgtcgccccggtg
cgcctggcagtgggagaagagcatgaccttaccgagctcgcgactgaactcgtcaacgcc
gcctatagccgggttgacatggtggaacgccgtggcgaattcgcagtacgtggcggcatc
gtcgacgtcttcccaccggtgctagaacacccggtccgtatcgatttttttggtgacgag
atcgaggaaatgacctccttcgcggtagccgaccagcgatccaccgacgagactcaccaa
gaactgatctgcgctccttgccgtgagctcatcctcaccgacgaggtacgttcccgagcc
aaggctttgctgaccgaccatcccgaattagctgacatgttggagcggatcggcaacggt
caagctgtcgaggggatggaggctcttatgccggccctcgttgatgagatggaactactc
gtcgacgtcttgcctgagcatgccatggtcgtcctgtcagatccagagatggtgcgctct
cgtgctgcggatctggttcgcacctccgaagagttcctcggtgctggatgggcagctgcc
gccggcggcggacaagctcctattgacctggctgcttcgggttatcgcagcttggcccag
gtaagatcgcactgtctagagcgcggcatggcctggtggtcgatgtcctctttttctctg
gattcttcggcaactgatgtcctcgtcgacgacgacatcaccagtgctccgcaaacggtt
aatccccagctcgtggccgttgagccgtggcatggcgacgtcgaggcagctgttaaggat
ctgacggctcgccttgacgacggctggacggtcctgttgtgcgccgagggtgagggcatg
gccaaacgcatgtccgagctgttgggggagcacaacgtcgcggccagactggttgacgat
gtcgacccggatgccaccgagccatgcgttcaggtcatccgacttcaccagcgtcatggg
ttcgcggccgagtctgtcaagctgctcgttgcttccaccggtgacctcgccgagtcccag
gatcccggtggcactggcgaacgtcgcatgcctcgacgacgtcgaaatcagatccaaccc
ctggagctcaagccgggcgatctcatcgtccacgagcagcacggtgtggggcggtacgtg
gagatggtgcagcgcactgtcggcggcgctacccgcgagtacctcgttatcgagtacgcg
ccctccaaaaaaggtcagcctggtgatcgcctcttcgtgccggtgaactcgctggatcag
gtgacccgatatgtcggtggggatgcccccagcctcgaccgtatgggtgggggagactgg
cgcaagcgcaaggcgcgtgcccgcaaggcggtccgtgaaatcgccgccgagctcatcaag
ctctatgctgctcgccaggccactaaggggcatgctttcggccctgacactgcgtggcag
cgggagttggagggcgccttcgcttacgtcgagacacctgaccagctcaccaccattgcc
gacgttaagcgtgacatggagcaggtcgttccgatggaccggctggtctgtggtgatgtc
ggctacggtaaaaccgagatcgcggtacgtgctgcgtttaaggcggttcaggacggcaag
caggtggcggtgctggtgcccactactttgctggtgcagcagcatttccagaccttcact
gagcgttacgcaggtttccccgtcaaggtggcggccctgtctcgtttccagactgacacc
gaagcccgcgaaaccctcgagggacttcaacgcggtaccgtcgacgtcgtcgtcggtacc
catcgcttgctggccaaggaggttgagttcaaggatctcggcttggtcatcgtcgacgag
gaacagcgttttggcgtcgagcacaaagaagcgcttaaacgcatgagggtcaacgtcgat
gtgcttgctatgagcgctacgccgatcccgcgcaccttggagatggcggtgacaggcatc
cgcgagatgagtacgatcgccaccccaccagaggagcgtcacccggtgctcactttcgcc
ggaccctatgacgaggggcaggttgttgcggcgatccggcgtgaacttgctcgtgaaggt
caggtcttttacatccacaaccgcgtgcagtccattgaaaagacagctgccaagctgcgt
gaacttgttccagaagcgcggattgtcactgcgcacggccagatgaacgagaaacagctg
gaacagatcatggtggacttctgggagcgtcgtgccgacgtcctggtatgcacgacgatc
gttgagtcgggtatcgacatttctaccgccaatactctgctcatcgatcgagctgacctt
atggggctgtctcaactgcaccagttgcgtggtcgtgtggggcggtctcgggagcgtggc
tatgcctacttcttgtacccggcggacaagccactctcccaaacggctcacgaccgcttg
gcgacgatggccgctcacaccgacctgggttctggcatggccatcgccatgaaggatctg
gagattcgcggcgccgggaatctgcttggtggtgagcagtccgggcacattgctgacgtt
ggcttcgatctttacattcgtctggtaggtgacgccgtcgctgagttccgtggggacagc
accactgccgatgaaccggagatgcgtattgagctgcccgttgacgccaaccttccggtt
gagtacgtcgaaactgaacgcttacgccttgagatgtacaagcgattggctgaagtgcgc
agtgacgaggaggttgacgccatcggggccgagttggtcgaccgttatggaccgatgccc
gagcccgtccaagctctgcttggggtggcgcgattccgcctgctatgtcgacaggcggga
attcatgaggtcgttccggctggacgcaacatcaggttttcgccggtgaatctgccggaa
tcccgggtgatgcgcctcaagaggttgtatcccggatcggtggtcaagcaaacagcgggt
ttggtgctggtgcctaaacccatgactgcaacgattgggggccagccattgggcggtgcc
gacttgttgaagtggagtgccgacctcgtgacgaacgtcctggctgttgacaccccgatc
ggcgcgggccggcccactgagccatag
DBGET
integrated database retrieval system
