Paraburkholderia acidiphila: FAZ97_07330
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Entry
FAZ97_07330 CDS
T07262
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pacp
Paraburkholderia acidiphila
Pathway
pacp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pacp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FAZ97_07330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacp03400
]
FAZ97_07330 (mfd)
Enzymes [BR:
pacp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAZ97_07330 (mfd)
DNA repair and recombination proteins [BR:
pacp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FAZ97_07330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QGZ54743
UniProt:
A0A7Z2J8L5
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All DBs
Position
1:1642059..1645538
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AA seq
1159 aa
AA seq
DB search
MSDIAASSQSPSPVAVVKPGQRYAFDGTHGSSDALLIARYREAARVGARQAPLLAVICAS
AVDAQRLAQEIPFFAPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILI
VPATTALYRMPPASFLAAYTFSFSQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGS
LIDLFPMGSPLPYRIDLFDDQVDSIRAFDPDSQRSLYPVKDVRLLPGREFPFDEASRTAF
RSRWREVFEGDPSRATIYKDMGNGVPSAGIEYYLPLFFEETATLFHYLPENAQLVFSGDL
DASIRRFTNDTKQRYNFLSHDRERPILEPQRLFLTDEDFFAFAKPFARLVLPAASAGGWA
TALPNLAIDRHADDPLASLRTYLGTTKNRVLFAVESAGRRETIAQLLADNHLRPTGADSF
EDWLTGDVRFALGVAPLSTGFSLPGEELAVITETELYGPLARRAGRRRQEQASNVDSMVR
DLSELKVGDPVVHAQHGIGRYHGLVTMDLGEGDTEFLHLEYANGSKLYVPVSQLHVISRY
SGADPDSAPLHALGSGQWEKARRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYVK
FAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQV
AILSPTTLLAEQHTQTFTDRFSEWPVRIAELSRFKSAKEVSSAIQQINDGSVDIVIGTHK
LLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRD
FSVIATAPQKRLAIKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEAL
VPEARIAVAHGQMHERELEAVMRDFVAQRANVLLCTTIIETGIDVPTANTILIHRSDKFG
LAQLHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI
RGTGEVLGDKQSGEIQEIGFQLYTDMLNDAVKALKDGREPDLNAPLAATTEINLHAPAIL
PADYCGDVQERLSLYKRLANCEHDDSIDGIQEELIDRFGKMPAQAHALIETHRLRLAAKP
LGITKIDAGEAVIGLQFVPNPPVDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRVA
TVKETLRALGAPNRAGASR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatatcgccgcttcctcgcaatctccgtcccccgtcgccgtcgtcaagccgggg
cagcgctacgcgttcgacggcacgcacggctcgtccgacgcgctgctgatcgcccgctac
cgcgaggccgcgcgcgtcggcgcgcgccaggcgccgctgctggccgtgatttgcgccagc
gccgtggatgcccagcggctcgcccaggagattccgttcttcgcgcccgaggcgcgcgtg
cgcctcctgcccgactgggaaacgctgccgtacgacacgttctcgccgcaccaggacctc
gtttcggagcgtctggccacgctccacgatctcggcgaaggccgctgcgacatactgatc
gtgccggccacgacggcgctctaccgcatgccgcccgcctcgtttctcgccgcctatacg
ttctcgttctcccagggcgagcgcctcgacgaagcgaagctcaagtcgcagctcacgctc
gcgggctacgagcatgtgagccaggtggtacgcccgggcgagtactgcgtgcgcggttcg
ctgatcgacctctttccgatgggctcgccgctgccctaccgtatcgacctcttcgacgac
caggtcgactcgatccgcgcgttcgacccggacagccagcgcagcctctatcccgtgaaa
gacgtgcgcctgttgccgggccgcgagtttccgttcgacgaggcctcgcgcaccgcgttt
cgcagccgctggcgcgaggtgttcgagggtgacccgagccgcgcgacgatctacaaggac
atgggcaatggcgtgccgtcggcgggcatcgaatactacctgccgctctttttcgaagag
acggctacgctcttccactatctgccggaaaacgcccagctggtgttttcgggcgacctc
gacgcgtcgatccgccgcttcacgaacgacacgaagcagcgctacaacttcctctcgcac
gatcgcgagcggccgatcctggagccgcagcgcctcttcctgaccgacgaggacttcttc
gcgttcgcgaagcccttcgcgcgcctcgtgctgcccgccgcgagcgcgggcggctgggcc
acggcgctgccgaacctcgcgatcgaccgccacgccgacgacccgctcgcctcgctgcgc
acgtatctcggcacgacgaagaaccgcgtgctgttcgcggtggaatcggcgggccggcgc
gaaaccatcgcgcaactgctcgccgacaaccaccttcgccccacgggcgcagacagcttc
gaagactggctcaccggcgacgtgcgcttcgcgctgggcgtcgcgccgctctccacgggc
ttttcgctgccgggcgaagagcttgcggtcatcaccgagaccgagctttacgggccgctt
gcgcgccgtgcgggacgccgccgccaggaacaggcgagcaacgtcgattcgatggtgcgc
gacctctccgagctcaaggtgggcgatccggtggtccatgcgcagcacggcatcggccgc
tatcacggtctggtgacgatggacctcggcgaaggcgacaccgaattcctgcacctcgaa
tacgcgaacggcagcaagctctacgtgccggtctcgcagttgcacgtcatttcacgctac
agcggcgccgatccggatagcgcgccgcttcatgcgctcggctcgggccagtgggaaaag
gcgcgccgcaaggccgcgcagcagatccgcgacaccgcggccgaactcctgaatctctac
gcgcggcgcgccgcgcgcgagggtcacgcgttcgcgctcgaaccgcgcgactacgtgaag
ttcgcggaaagcttcggcttcgaggaaacgcctgaccaggctgccgcgatcgccgccgtg
atcggcgacatgacgagcggcaagccgatggaccgcctcgtgtgcggcgacgtgggcttc
ggcaagaccgaagtcgcgttgcgcgcggcgttcatcgccgtgatgggcggcaagcaggtg
gcgatactctcgcccaccacgctgctcgccgagcagcacacgcagaccttcacggaccgc
ttttccgagtggcccgtgcgcattgccgaattgtcgcgcttcaagtccgcgaaggaagtg
agcagcgcaatccagcagatcaacgacggcagcgtcgatatcgtgatcggcacgcacaag
ctgctgtcgtccgatgtgcagttcaagcgcctcgggctcgtcatcatcgacgaggaacac
cgcttcggcgtgcgccagaaggaggcgctcaaggcgctgcgcgcggaagtggacgtgctc
acgctgaccgccacgccgattccgcgtacgctcggcatggcgctcgaaggcctgcgcgac
ttctccgtgatcgcgaccgcgccgcagaaacggctcgccatcaagaccttcgtgcgccgc
gaggaagacagcgtgattcgcgaggccatgctgcgcgaactcaagcgcggtggccaggtg
tacttcctgcacaacgaagtcgagaccatcgagaaccgccgcgcgatgctcgaagcgctg
gtgcccgaagcgcgcatcgcggtggcgcacggccagatgcacgagcgcgaactcgaagcc
gtgatgcgcgacttcgtggcgcagcgcgcgaacgtgctgctctgtaccacgatcatcgag
accggcatcgacgtgccgaccgcgaacacgatcctgatccaccgctccgacaagttcggt
ctggcgcagttgcaccagttgcgcggccgtgtcgggcgttcgcaccaccaggcgtacgcg
tatctgctcgtgcacgatccgcaagggctcaccaaacaggcgcaacggcggctggaagcc
atccagcagatggaggaactcggctcgggcttctatctggcgatgcacgacctcgaaatt
cgcggcacgggcgaagtgctcggcgacaagcagtcgggcgagatccaggagatcggcttc
cagctttacacggacatgctcaacgacgccgtgaaggcgctcaaggacggccgcgagccc
gatctcaacgcgccgctggcggcgaccaccgagatcaacctgcacgcgcccgcgatcctg
cccgccgactattgcggcgacgtgcaggagcgcctgtcgctctacaagcgcctcgcgaat
tgcgagcatgacgattcgatcgacggcatccaggaagaactgatcgaccgcttcggcaag
atgccggcgcaggcgcacgcgttgatcgaaacgcatcgtctgcgactggcggcgaagccg
ctcggcatcacgaagatcgatgcgggcgaagcggtcattggcctgcagttcgtgccgaat
ccgcccgtggacgccatgcgcatcatcgagatggtgcagaagcacaagcacatcaagctc
gcgggtcaggacaagctgcgcatcgaaacgcgcagccccgacctcgcggtgcgcgtggct
accgtgaaggagacgttgcgcgcgctcggcgcgcccaatcgcgctggcgcgtcgcgctga
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