Pigmentiphaga aceris: FXN63_10485
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Entry
FXN63_10485 CDS
T06198
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pacr
Pigmentiphaga aceris
Pathway
pacr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pacr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FXN63_10485 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacr03400
]
FXN63_10485 (mfd)
Enzymes [BR:
pacr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FXN63_10485 (mfd)
DNA repair and recombination proteins [BR:
pacr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FXN63_10485 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Glyco_tran_WecG
UB2H
AroM
AAA_22
ERCC3_RAD25_C
HemY_N
Motif
Other DBs
NCBI-ProteinID:
QEI06217
UniProt:
A0A5C0B0Q6
LinkDB
All DBs
Position
complement(2432224..2435709)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSDSSQPLANPLDASVTSFASPLADLARSILAGLKSGERYAQPRPAGAGDAWLLAELARL
AKRPLVILSADPLDAQRLAEEVRLFAPELRVHQFPDWETLPYDAFSPHEDLVSERLKTLH
ALSLNAVDVLTVPVTTALHRLGPPAFMAAYTFSFKQGDKLNEQALRTQLTLANYEHVTQV
TAPGEFCIRGGLIDLFPMGSAVPYRLDLFDNVIESIRAFDIDTQRSLYPVKTVQLLPGRE
FPMDESARNDFRARFREVFEGDPSRALPYKDIGNGIAFPGVEYYLPLFFDQTATLFDYLS
DQSITVTIGDLDDAIRRFAQDTATRYNFLKSDRERPVLPPESIFLDTEGLYGHLRAFARL
AFTAERTHPDFRLPPDVSVHRKADDPVSRLRALVSQPDAQVLLCAESAGRRETITQMLSD
FGLHPEPVADIPAFLDAPTPFSIGIAPLSSGFVLPKQHLSVLTEADLFAGHTVRRGKRGQ
ERASDIESMVRDLSELRVGDPVVHAQHGIGRYHGLVTMDIGEGEMEFLHLEYSGGSTLYV
PVSQLHVIARYSGADPETAPLHSLGSGQWEKARRKAAQQARDTAAELLNIYARRAARQGF
AFKLPLADYETFANSFGFEETVDQAAAIEAVLADMVSGKPMDRLVCGDVGFGKTEVALRA
AFMAVANDKQVAILCPTTLLAEQHAQNFSDRFADWPVKVVELSRFKSAKEISAAIEQIND
GRVDIVIGTHKILSDKVKFKRLGLVIIDEEHRFGVRQKEALKALRSEVDVLTLTATPIPR
TLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDNSTIREALLRELKRGGQIYFLHNEVDT
IHNRRAKLEELVPEARIAVAHGQMPERELEQVMKAFYQQKFNVLLCTTIIETGIDVPTAN
TIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLMTPGEDAITSNAKKRLEAIQAMEELGS
GFFLAMHDLEIRGTGEVLGDSQSGNIQEVGFQMYNDMLNEAVRALRDGKEPDLNAPMSVT
TEINLHVPALLPNDYCGDVHARLSVYKRLANCQDADAIIAIQEELIDRFGKLPDATRALI
EIHRLRLDAKPLGVMKIDASESTAVLQFIPNPPIDPLRIMQLVQKNKNVRIVGQDRLRAE
IKGTDIKARVDAVRALMRSLV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactcctcccaaccactagccaacccgctagacgcgtctgtcacttcttttgcc
agcccgcttgccgatcttgcccggtcgattctggctggcttgaagtccggggagcgctac
gcgcagccccgccctgcgggcgcgggtgatgcctggttgctggcggaattggctcgtttg
gccaagcgcccgctggtgattcttagtgctgacccgctggacgcccagcgcctggccgag
gaagtgcgcttgtttgcgccggaattgcgggtgcatcagttccctgactgggaaacgctg
ccctacgacgcgttctcgccgcacgaggacttggtgtccgagcggttgaagaccttgcat
gcgctgtcgctgaacgcggtggacgtgttgacggtgccggtgacgaccgccctgcatcgc
ctggggccgcctgcgttcatggcggcctacacgttctcgttcaagcagggtgacaagctg
aacgagcaggccttgcgcacgcagttgacgctggccaattacgaacacgtgacgcaagtc
actgcgccgggtgagttctgcattcgcgggggcttgatcgacttgttcccaatgggctcg
gctgtgccgtatcggctagacttgttcgacaacgtgatcgagtcgattcgtgcgtttgat
atcgatacgcagcgcagcctgtatccggtgaagaccgtgcagttgctgccgggccgtgaa
ttcccgatggacgagtcggcacgcaatgatttccgcgcgcgtttccgtgaggtgtttgag
ggcgatccgtcgcgggcactgccttacaaggatattggcaacggtattgcgttcccgggt
gtcgagtattacctgccgctgttctttgaccagacggctacgctgttcgattatctgtcg
gaccagagcattaccgtcaccattggcgatctggacgatgccattcgccgttttgcgcaa
gacactgccactcgctacaacttcctgaaaagcgatcgcgagcgccctgtgttgccgccg
gaatcgattttcctggatacggaaggtttgtatgggcatctacgtgcgtttgcacggttg
gcattcaccgccgagcgcacgcacccggatttccgcctgccgcccgatgtgtcggtgcat
cgcaaggccgatgacccggtgtcgcgtctgcgcgcgttggtcagccagcccgatgcgcag
gtcttgttgtgtgcggaatctgccggtcgccgtgaaaccatcacgcagatgttgagcgac
ttcggcctgcacccggaaccggtggctgatatcccggccttcctggatgcgccgacgccc
ttctctattggtattgcgccgctgtcgtctggctttgtgctgcccaagcagcatttaagt
gtgttgaccgaagcggacttgttcgccggtcatacagtccgccgtggcaagcgcggccag
gaacgcgccagcgacatcgaatcgatggtgcgcgatctgtccgagttgcgtgtgggcgac
ccggtggtgcatgcgcagcatggcatcgggcgttatcacggcctggtgacgatggacatt
ggcgaaggcgagatggagtttctgcatctcgagtattcgggtggcagcactttgtatgtg
ccggtgtcgcagttgcatgtgatcgcccgctacagcggtgccgacccggaaaccgcgccg
ctgcattcgctgggttcaggccagtgggaaaaggcacgtcgcaaggctgcgcagcaggcg
cgcgataccgctgcggaattgctgaacatctacgcccgccgcgccgcgcgtcagggcttt
gcgttcaagctgcccttggcggattacgaaactttcgccaattccttcggtttcgaagaa
accgtggaccaagccgcggccatcgaggctgtgctggccgacatggtgtcgggcaagccc
atggaccgcttggtatgcggcgacgtgggctttggcaagaccgaggtcgccttgcgcgcc
gcgttcatggcggtggccaacgacaagcaagttgccattctgtgcccgaccacgctgctg
gccgagcaacatgcgcagaacttctcggatcgctttgcagactggccggtgaaggtcgtc
gagctgtcgcgcttcaagtcagccaaggagatcagcgcagccatcgagcagatcaacgat
gggcgcgtggacatcgtaatcggcacgcacaagatcctgtcggacaaggtgaagttcaag
cgcctgggcctggtcatcatcgacgaggaacatcgctttggggtgcgtcagaaggaagcg
ctgaaggcattgcgctctgaagtggatgtgctgaccctgaccgccacgcctattccgcgc
acgcttggcatgtcgctggaaggcattcgtgacttctcggtgattgccaccgcgccgcaa
aagcgcctggccatcaagaccttcgtgcgccgtgaagacaacagcaccattcgtgaagcc
ttgctgcgcgaactgaagcgcggcgggcaaatttacttcctgcataacgaggtggacacc
atccacaatcgtcgtgcgaagctggaagaactggtgccggaagcgcgtattgcggtggcc
cacgggcaaatgccggagcgcgagctggaacaggtgatgaaggccttctaccagcagaag
ttcaacgtgctgctgtgtaccaccatcatcgaaaccggcattgatgtgccgactgccaac
acgatcgttattcaccgcgctgatcgctttggcctggcgcagcttcaccagctgcgcggc
cgtgtggggcgttcgcaccaccaagcttatgcctacctgatgacgccgggtgaagatgcg
atcaccagcaatgccaagaagcggctggaagcaattcaggcgatggaagaactgggttcc
ggcttcttcctggccatgcatgatctggaaattcgcggcacgggtgaagtgctgggcgat
tcgcagtcgggcaacatccaggaagtcggcttccagatgtacaacgacatgctgaacgaa
gccgtgcgcgccctgcgcgatggcaaggaacccgatctgaacgcgccgatgtcggtcacg
accgagatcaacctgcacgtacctgccctgttgccgaacgattactgcggtgacgtgcat
gcgcgcctgtcggtgtacaagcgcctggccaactgccaggatgccgatgcgatcattgcc
atccaagaggaattgatcgaccgtttcggcaagctgccggacgccacgcgcgcgctgatc
gaaatccaccgcctgcgtctggacgccaagccgctgggtgttatgaagatcgacgccagt
gagtcgactgccgtgctgcaattcatcccgaatccgccgattgacccgctgcgcatcatg
cagctggtgcagaagaacaaaaatgttcgcatcgtcggccaggatcgtttgcgtgccgag
atcaagggcacggatataaaagctcgggtcgatgcggtgcgggcgctgatgcgatccttg
gtgtaa
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