Pigmentiphaga aceris: FXN63_25520
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Entry
FXN63_25520 CDS
T06198
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pacr
Pigmentiphaga aceris
Pathway
pacr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pacr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FXN63_25520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacr03400
]
FXN63_25520
Enzymes [BR:
pacr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FXN63_25520
DNA repair and recombination proteins [BR:
pacr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FXN63_25520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
HC2
Motif
Other DBs
NCBI-ProteinID:
QEI08836
UniProt:
A0A5C0B4Q0
LinkDB
All DBs
Position
5912337..5915228
Genome browser
AA seq
963 aa
AA seq
DB search
MPDALQRYRDKRDFSLTSEPQGGRAKKGAPLSFVVQKHAARNLHYDFRLELDGSLKSWAV
PKGPSLDPADKRMAVHVEDHPLDYGSFEGTIPPGQYGAGTVIVWDRGTWTPVGDAREGYA
AGKLKFALDGEKLRGHWTLVRMRPRAGEKQEAWLLIKEKDDEAKAASAFNVVDALPDSVL
NGSTVERPATSAQTGAKKATKKSAKQAAPAATSAAKKPSTKKAAATSQADTPLPAKAVRA
EQRAAKAAASADSTRTTTAPSKTKPNTATLPAGATKAKLPLTLSPQLATLVDRAPADTGW
IYEMKFDGYRLLARVDADGVRLFTRNGHDWTSKLRRVAAAVKALGLPSGWLDGEIVVPDA
HGVPDFQLLQNALDAARGDVIQYYLFDLPFFNGLDLRQSPLSERRALLGKLLEDAPDPRV
RFSESFDATPQSLLHSACSLHMEGVIGKRADAHYSTGRSSNWIKLKCTQRQEFVVIGYTD
PQGSRLGLGALALGVYDAAGKLHYMGNVGTGFTQDVLKDLKTRLEKLHVDKTPAVNAARN
LRVNWVKPTLVAEVSFAGWTRDKKIRQGVYHGLRNDKPAKAIVLEKSATVDADGHVSKQA
QADGDVDMTQASTTTRASKTAKKTASETVERPAVKKNTPAESATEKPAAKKSATKQSRSK
QAATKQAASADSAVPTTVKITHPDRVVDPSSGITKREVVEYYARASAAILPHLQRRPVSL
VRAPDGVGGQQFFQKHDDKLSIPGIKQLNPDFDPDHAPLMEVATLKALLGAAQMNVLEFH
TWNATTRSIEKPDRMTFDLDPGDGLAWKHMVEGAQLVRALLNELELTSFLKTSGGKGLHV
VVPIKPSLGWDAVKDLSQTIVAHLARTIPARFVAKSGPKNRVGKIFADYLRNGRGATTAS
AWSARARPGMGISVPLSWDELPELRSSDQWTIRNADERLELPDPWADYDAHRNDVRPAIR
ALT
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatgccttgcaacgctatcgcgacaagcgcgatttttcgctgaccagcgaaccc
cagggcggccgtgcgaaaaagggcgcaccgctgtcattcgtggtgcagaaacacgcggcg
cgcaatttgcactatgacttccgcctggaactcgatggcagcctgaaaagctgggccgtg
cccaaaggccccagcctggacccagccgacaaacgcatggcagttcacgtggaagatcac
ccgctggactacggcagttttgaaggcacgattccgcccgggcagtacggtgcgggcacg
gtgatcgtgtgggaccggggcacctggacacccgtcggtgacgcgcgggaggggtacgcc
gctggcaagctcaagttcgcgctcgacggtgaaaaactgcgcggacactggaccctggtg
cgaatgcgtccgcgcgccggggaaaagcaggaagcctggctgctgatcaaggaaaaggac
gacgaggccaaggcagccagtgcgttcaatgtggtcgatgctttgccggatagtgtgttg
aatgggtcgacggttgagaggcccgcaacgtctgcgcaaaccggcgcaaagaaggcaacc
aagaagtcagcgaaacaagctgcacctgccgcgacgagcgcggcaaaaaaaccatcaacg
aagaaagccgctgccacatcacaagcagacacaccgctgcccgccaaggccgtccgtgcc
gaacaacgcgcagcgaaggcggctgccagtgccgacagcactcgcacgacgacggcacca
tcaaagacaaaacccaacaccgctaccctgcccgctggcgcgaccaaagcgaaacttccg
ctgaccctgtcaccccagcttgccaccttggtggaccgtgcacccgccgataccggctgg
atctacgaaatgaagttcgatggctaccgtctgctcgcccgcgtcgatgcagatggggtg
cgcctgttcacgcgcaatgggcacgactggaccagcaagctacggcgcgtggcggcggca
gtgaaagccttggggttgccgtccggctggctcgacggcgagatcgtggtccccgatgcg
catggcgtgcccgacttccaactgctgcaaaacgcactcgatgcagcgcgcggcgacgtg
atccagtattacctgttcgacctgcctttcttcaacggcctggaccttcgccaaagcccc
ttgagcgagcgacgcgccctgcttggcaagctacttgaagacgcccccgacccgcgcgtg
cgattcagcgaaagcttcgacgccacgccccaaagcctgctgcacagcgcctgctcgctg
cacatggaaggcgtgatcggcaaacgggcagacgcgcactacagcaccgggcgctcaagc
aactggatcaagctcaagtgcacgcagcgtcaggaatttgtggtcatcggctacaccgat
ccgcaaggcagcagacttggcctgggtgccttggcgctgggggtctacgatgcggccgga
aaattgcactacatgggcaatgtcggcaccggtttcacgcaggacgtgttgaaagacctg
aagacacgcctggaaaaattgcacgtcgacaagacgcctgcggtgaatgcggcgcgcaac
ctgcgtgtgaactgggtcaaacccacgctggtggcagaggtgtcctttgccggatggacg
cgtgacaagaaaattcgtcagggcgtctatcacggcctgcgcaacgacaaacccgccaag
gcaattgtgctggaaaaatcggccaccgtagatgcagacggccatgtgagcaagcaagct
caggcagatggagacgtggatatgacccaggcatcaactaccacccgagccagtaaaact
gcgaagaagacagccagcgagacggttgaacgccccgctgtcaaaaagaacacaccggcc
gaatctgccacagaaaaaccagcggccaaaaagtctgccacgaagcaatcccgctcgaag
caagctgccaccaaacaagcagcctccgccgacagcgccgtccccaccaccgtcaagatc
acccaccccgaccgtgtggtcgaccccagcagcggcatcaccaaacgtgaagtggtcgag
tactacgcccgcgcctcggcggcgatcctgccgcacttgcagcgtcgcccggtatccctg
gtccgtgcgccagacggcgtgggcggccagcagttcttccagaagcacgacgacaaactc
agcattcccggcatcaaacagttgaacccggacttcgaccccgaccacgcccccttgatg
gaagtcgctactctgaaagcactgctgggcgcagcacagatgaacgtgctggaattccac
acctggaacgccaccacccgcagcatcgaaaaacccgaccgcatgaccttcgacctggac
ccgggcgatggcctggcatggaagcacatggtggaaggcgcgcaactggtgcgggccttg
ttgaacgagctggaactgaccagcttcctgaaaaccagtggcggcaagggcttgcacgtg
gtggtgccgatcaagcccagcctgggctgggatgcggtcaaagacctgtcgcaaactatc
gttgctcatttggcgcgcaccattcccgcacgctttgtcgccaaaagcgggccgaaaaac
cgcgttggcaaaatctttgccgattacctgcgcaacggtcgtggtgccaccacggccagc
gcgtggtcggcacgggcacgcccgggcatgggaatctctgtaccgctgtcttgggacgaa
cttcccgaactccggtccagtgaccaatggacgatccgcaacgcagacgagcggctggaa
ctccccgacccatgggccgactacgatgcgcatcgcaatgatgtccgtccggcaattcgc
gcattgacatga
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