Paraburkholderia acidisoli: FAZ98_07180
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Entry
FAZ98_07180 CDS
T07287
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pacs
Paraburkholderia acidisoli
Pathway
pacs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pacs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FAZ98_07180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacs03400
]
FAZ98_07180
Enzymes [BR:
pacs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAZ98_07180
DNA repair and recombination proteins [BR:
pacs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FAZ98_07180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QGZ61535
UniProt:
A0A7Z2JFV1
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All DBs
Position
1:1657395..1660883
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AA seq
1162 aa
AA seq
DB search
MSDIAASSQSPSAPSPVAVVKAGQRYAFDGTHGSSDALLIARYRDAARGNAGQPPLLAVI
CASAVDAQRLAQEIPFFAPNARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCD
ILIVPATTALYRMPPASFLAAYTFSFTQGQRLDEAKFKSQLTLAGYEHVSQVVRPGEYCV
RGSLIDLFPMGSPLPYRIDLFDDQVDSIRAFDPDSQRSLYPVKEVRLLPGREFPFDEAAR
TAFRSRWREVFEGDPSRATIYKDIGNGVPSAGIEYYLPLFFEDTATLFHYLPENAQLVFS
GDLEASIRRFTNDTKQRHSFLSHDRERPILEPKRLFLTDEDFFTLAKPFARLVLPAASEG
GWAAPLPTLAINRHADDPLASLRGYLDTTKNRVLFAVESAGRRETIAQLLAENRLRPASA
DSYEDWLTSEERFVLGVAPLSTGFSLPAEGLAVITETELYGPLARRAGRRRQEQASNVDS
MVRDLSELKVGDPVVHAQHGIGRYHGLVTMDLGEGDTEFLHLEYANGSKLYVPVSQLHVI
SRYSGADPESAPLHALGSGQWEKARRKAAQQIRDTAAELLNLYARRAAREGHAFALEPKD
YVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGG
KQVAILSPTTLLAEQHTQTFTDRFADWPVRIAELSRFKSAKEVSNAITQINDGSVDIVIG
THKLLSSDVQFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEG
LRDFSVIATAPQKRLAIKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVETIENRRAML
EALVPEARIAVAHGQMHERELEAVMRDFVGQRANVLLCTTIIETGIDVPTANTILIHRSD
KFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHD
LEIRGTGEVLGDKQSGEIQEIGFQLYTDMLNDAVKALKDGREPDLNAPLAATTEINLHAP
AILPADYCGDVQERLSLYKRLANCEHDDSIDGIQEELIDRFGKMPPQAHALIETHRLRLA
AKPLGITKIDAAEAVIGLQFVPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAV
RVATVKETLRALGAPTRAAAAR
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatatcgccgcttcctcgcagtccccgtccgcaccgtctcccgtcgccgtcgtc
aaggcgggtcagcgctacgcgttcgacggcacgcacggttcgtccgatgcgctcctgatc
gcccgttaccgcgacgccgcgcggggcaacgcgggccagccgccgctgctcgccgtgatc
tgcgcgagcgccgtggacgcccagcggctcgcgcaggaaatcccgttcttcgcgccgaac
gcgcgcgtgcgtctgctgcccgactgggaaacgctgccctacgacacgttttcgccgcac
caggacctcgtttccgagcggctcgccacgctgcacgatctcggcgaaggccgttgcgac
atcctgatcgtcccggccaccacggcgctgtatcgcatgccgcccgcctcgttcctcgcg
gcctacacgttctcattcacgcagggtcagcgtctcgacgaagcgaagttcaagtcgcag
ctcacgctcgccggttacgagcacgtgagtcaggtggtgcgccccggcgaatactgcgtg
cgcggctcgctgatcgacctgtttccgatgggctcgccgctgccctaccgcatcgacctg
ttcgacgatcaggtcgattcgattcgcgcgttcgacccggacagccagcgcagcctctat
ccggtcaaggaagtgcggctgctgccgggccgcgaattcccgttcgacgaagccgcgcgc
acggcatttcgcagccgctggcgcgaggtgttcgagggcgacccgagccgcgcgaccatc
tataaagacatcggcaacggcgtgccctcggcgggcatcgaatattacttgccgctcttt
ttcgaagacacggccacactgttccactatctgcccgagaacgcgcagctcgtgttttcc
ggcgatctcgaagcgtcgatccgccgcttcacgaacgacacgaagcagcgccacagcttt
ctctcgcacgaccgcgaacggccgatactcgaaccgaagcggctgttcctgaccgacgaa
gactttttcacgctcgccaagccgttcgcgcgcctcgtgctgcccgccgcgagcgaaggc
ggctgggccgcgccgctgcccacgctcgcgatcaaccgtcacgccgacgacccgctcgcc
tcgttgcgcggctatctcgacaccacgaagaaccgcgtgctgttcgcggtggagtcggcg
ggccgccgcgagaccatcgcgcaactgctcgccgagaaccgtctgcgccccgcgtccgcc
gacagttacgaagactggctcacgagcgaggagcgtttcgtgctcggcgtcgcgccgctt
tccacgggcttttcgctgcccgccgaaggcctcgccgtcatcaccgaaacggagctgtac
ggcccgctcgcgcgccgcgcgggacgccgccgccaggaacaggcgagcaacgtcgactcg
atggtgcgcgacctttccgagctgaaagtgggcgacccggtcgtgcacgcgcagcacggt
atcggccgctatcacggcctcgtgacgatggatctcggcgaaggcgacaccgaattcctg
cacctcgaatatgcgaacggcagcaagctctacgtgccggtgtcgcaactgcacgtgatc
tcgcgctatagcggcgccgacccggaaagcgcgccgctgcacgcgctcggttcgggccag
tgggaaaaggcgcgccgcaaggccgcccagcagattcgcgacaccgccgccgaactgctc
aacctctacgcgcgccgcgccgcgcgcgaaggtcacgcgttcgcactggaaccgaaggac
tacgtgaagttcgcggagagcttcggcttcgaggaaacgcccgaccaggcggcggccatc
gcggccgtgatcggcgacatgacgagcggcaagccgatggaccgcctcgtgtgcggcgac
gtcgggttcggcaagaccgaagtggcgttgcgcgcggcgttcatcgccgtgatgggcggc
aagcaggtcgcgattctttcgcccaccacgctgctcgccgagcagcacacgcaaaccttc
accgaccgtttcgccgactggcccgtgcgcatcgccgagctttcgcgcttcaagagcgcg
aaggaagtgtcgaacgcgatcacgcagatcaacgacggcagcgtcgacatcgtcatcggc
acgcacaagctgttgtcgtccgacgtgcagttcaaacgcctcggcctcgtgatcatcgac
gaggaacaccgcttcggcgtgcgccagaaggaaacgctcaaggcgctgcgtgccgaggtg
gacgtgctcacgctcacggccacgcccattccgcgtacgctcggcatggcgctcgagggc
ttgcgcgacttctcggtgatcgccaccgcgccgcaaaagcgtctggcgatcaagaccttc
gtgcgccgcgaggaagacagcgtgattcgcgaggccatgctgcgcgaactcaagcgcggc
ggtcaggtgtacttcctgcacaacgaagtcgaaaccatcgagaatcgccgcgcgatgctc
gaagcgctcgtgcccgaggcgcgcatcgccgtggcgcacggccagatgcacgaacgcgaa
ctcgaagccgtgatgcgcgatttcgtggggcagcgcgcgaacgtgctgctgtgcacgacc
atcatcgaaaccggcatcgacgtgccgaccgcgaacacgatcctgattcaccgctccgat
aaattcggtctcgcgcaattgcaccagttgcgcgggcgcgtcgggcgctcgcatcaccag
gcgtacgcctatttgctcgtgcacgatccgcaagggctcacgaagcaggcgcagcgccgt
ctggaagcgatccagcagatggaggaactcggctcgggcttctatctggccatgcacgac
ctcgaaattcgtggcacgggcgaagtgctcggcgacaagcagtcgggcgaaatccaggag
atcggcttccagctctacaccgacatgctcaacgacgccgtgaaggcgctcaaggacggc
cgcgagcccgacctgaacgcgccgctcgccgcgaccacggagatcaacctgcacgcgccc
gcgatcctgcccgccgactattgcggcgacgtgcaggagcggttgtcgctctacaagcgg
ctcgcgaactgcgagcacgacgactcgatcgacggcatccaggaagagctgatcgaccgt
ttcggcaagatgccgccgcaggcgcacgcgctgatcgaaacgcatcgcctgcggctggcc
gcgaagccgctcggcatcaccaagatcgacgccgccgaggccgtgattggcttgcagttc
gtgccgaatccgccgatcgacgccatgcgtatcatcgagatggtgcagaagcacaagcac
atcaagctcgcgggtcaggacaaactgcgcatcgaaacgcgcagcccggatctcgccgtg
cgcgtggccacggtgaaggagacgctgcgcgcgttgggcgcaccgactcgtgcggccgcg
gcgcgctga
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