Pontibacter actiniarum: CA264_15820
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Entry
CA264_15820 CDS
T05632
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pact
Pontibacter actiniarum
Pathway
pact03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CA264_15820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pact03400
]
CA264_15820
Enzymes [BR:
pact01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA264_15820
DNA repair and recombination proteins [BR:
pact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CA264_15820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3310
Motif
Other DBs
NCBI-ProteinID:
ARS36769
UniProt:
A0A1X9YV79
LinkDB
All DBs
Position
3689140..3692511
Genome browser
AA seq
1123 aa
AA seq
DB search
MKVKDFLELYRLDSVVQTLAQRLKATEPYRLQIKGLAGSQDAVLASAVYTLNYGHQLFVM
HDKEEAAYFYTDLKNLLGEEKEILLFPTSYKRPYSFDDTENANILMRAEVLNRLNQKTGK
GELIVTYPEALTEKVINKKSLVENTLGAKIGEKLDTTFLSEMLAEYGFERTEFVYEAGQY
AVRGGIVDVYSYANDLPYRIELFGDEIESIRTFDPDTQLSVETKKAISIIPNVQTKLLQE
TREAFLDFLPNNTTLWFKDVRLTLDVIDEYFDKASHNFEKMMATSGGTQIVSDPEQLFQT
QKQFKKLLEKYTVVEIGKRFHFKNTEVMQLQAKPQPSFNKDFKRLVKDLHEQQGAGFVNV
IATDSPRQINRLTMIFDELDHDVRFQHLPVSLREGFIDQTLKITCYTDHQLFDRFYQHKA
KTGHSKSKAMTLKELRSLQPGDYVTHTDYGIGRFAGLEKVEVGGRLQEAIRLVYRDDDLL
YVSIHALHKISKYSGKEGGPPSMSKLGSPEWENKKKKVKSKVKDIAHELISLYAKRKAAP
GYAYTRDGFLQAELESSFIYEDTPDQGKATEDVKADMEQPHPMDRLVCGDVGFGKTEIAI
RAAFKAACDGKQVAILVPTTILAMQHYRTFRDRLEQFPVTVDYVNRFKTAKDTKDTLKRV
AEGKVDILIGTHRIVSKDVKFKDLGLMIIDEEQKFGVKTKEKLKEMKINVDTLTLTATPI
PRTLHFSLMGARDLSVIATPPPNRQPVKTELHVFDEALIRDAIVYEMKRGGQVFFVHNRI
KDIEEIAAMILRHVPDCKVTYAHGQMEPEKLEKRMMKFVNGEYDVLVSTNIIESGLDIEN
ANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDL
GEGFKIAMRDLDIRGAGNLLGGEQSGFITDLGFEMYHQVLDDAIKELKETEFRDLFLNDN
LAEFIEPVRECNIETDMEVLIPDWYVSNISERLNLYSKLDSTKDLQELEKLRESIVDRFG
PLPEAVQQLVEIVKLRWQAQQLGFEKLTIKKEVMKGYLPSENNDKYFQSDVFGNILKYVQ
QHPRKSRLKEAKHKLIVIVEDIQSIADAKEVFEGLGIKEAVSA
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaaaagacttcctagagctttaccgcctcgacagtgtggtgcaaacccttgcc
caacggctaaaagcaactgaaccttaccgtctccagattaaaggtctggcgggtagccag
gatgctgtgctggcctcggcggtttatacgttgaattatgggcaccaactcttcgtgatg
cacgacaaagaggaggcagcttatttctataccgacctaaaaaacctgcttggggaggaa
aaggagatcctgcttttcccgacatcttacaagcgaccttatagcttcgacgataccgaa
aatgccaacatattgatgcgtgccgaggtgctcaaccgcctgaaccagaaaacgggaaaa
ggtgagctgatcgtgacgtacccggaggcgctgacggagaaggtgatcaacaaaaaatcg
ctggttgagaatacacttggagccaagataggcgagaaactggacacaacttttctaagt
gagatgctggctgagtatggttttgagcgcacggagtttgtgtatgaggcaggacagtat
gccgtgcgtggtggcattgtggatgtgtactcttacgccaacgatctgccctaccgtatc
gagcttttcggcgacgagattgaaagtatacgcaccttcgaccccgacacgcaactgtcg
gtggagacgaaaaaagccatctccatcataccaaacgtacagaccaagctactgcaggaa
acacgcgaggcattccttgatttcctgcccaacaacaccacactttggtttaaggatgta
cgcctgacgctggacgtgatcgatgagtactttgataaggcttcgcacaacttcgagaag
atgatggctaccagcggtggtacacaaatcgtttctgacccggagcaactgttccagacg
cagaagcagtttaagaagctactggagaagtatacggtggtggagatcggcaagcgcttc
cacttcaagaatacggaggtgatgcagctgcaggccaagccacagccatcatttaacaaa
gactttaagcggctggtgaaagacctgcacgagcagcagggtgcgggcttcgtaaacgtg
attgctaccgattcgccacgccagatcaaccgcctcaccatgatctttgatgagttggac
cacgacgtgcgtttccagcacctgccggtttcgctgcgtgagggcttcattgatcaaaca
ctcaaaataacctgctacaccgatcaccagctgttcgacaggttctatcagcacaaggcc
aaaaccgggcactctaagtccaaggccatgacgctgaaagaactgcgctcactgcaacct
ggcgactacgtaacccacaccgactacggcatcggccgctttgccgggttagagaaagta
gaggttggtggacgtttgcaggaggcaatcaggctagtttaccgcgatgatgatttgctg
tatgtaagtatacacgccctgcacaagatcagcaagtatagcggcaaggaaggtggtccg
ccaagtatgagtaagctgggctcgccagagtgggagaacaagaagaagaaggttaagagc
aaggttaaagatattgcacacgagctgatcagcctttatgccaagcgcaaagctgctcca
ggttatgcttatacccgtgatggctttttgcaggccgaactggaatcgtcttttatatac
gaggataccccagaccaaggcaaggcaaccgaagatgtaaaagccgacatggagcagccg
cacccgatggacaggttggtttgtggcgacgtgggttttggtaagacagaaattgccatt
cgcgcggcctttaaagctgcctgcgacggcaagcaagtagccatactagtgcctaccact
attctggccatgcagcactaccgcaccttccgcgaccgcctggagcagttcccggtaaca
gtggattatgtgaaccgctttaaaacagctaaagacaccaaagacactttaaagcgtgtg
gctgaaggcaaagtggatatcctgattggtacgcaccgcatcgtaagcaaagacgtgaag
tttaaggaccttggcttgatgattatagatgaggagcagaagtttggggtgaagacaaag
gagaagctgaaggagatgaagataaacgtggatacgctgacgcttacggctacgcctatt
ccgcgcacgctgcacttctcgctgatgggtgcccgtgacctttctgttatcgccacacca
ccgccaaaccgccagccggtaaaaacagaactacatgtgtttgacgaggcgctgattcgg
gatgccattgtgtacgagatgaagcgtggcggccaggtgttctttgtacacaaccgtatt
aaagacattgaggagattgccgctatgattctgcgccacgtaccagactgcaaggtaact
tacgctcacgggcagatggagcctgagaagctggagaaacgcatgatgaagtttgtaaac
ggcgagtatgatgtgctggtaagtaccaacatcatcgaatctggcttggatattgaaaat
gccaacaccatcatcattaaccgcgcgcacatgtttggtctatcagatctgcaccagatg
cgtggccgtgtaggtcgctcaaataaaaaagcttactgctaccttttaacaccacctgta
gcaggcttaccgtctgatgcccgtaagcgcctgagcacgctggaagaattctctgacctg
ggcgaaggcttcaagattgccatgcgcgacctggacattcgcggggcgggtaacctgttg
ggcggcgaacaaagtggctttatcactgaccttggctttgagatgtatcaccaggtactt
gacgatgccatcaaagaactgaaagaaaccgaattccgcgacctgttcctgaacgacaac
ctggccgaattcatagagccggtgcgcgagtgcaacatcgaaaccgatatggaagtgctg
ataccggattggtacgtgagcaacatctcagaacgtctgaacctgtacagcaaactcgac
agcaccaaagacctgcaggaactggagaaactgcgcgaaagtatagtagaccgatttggc
cctttaccggaggcagtgcaacagcttgtagagatcgtgaagctgcgctggcaggcccag
cagttgggttttgagaagctcactattaaaaaagaagtgatgaagggctatctgccgagc
gaaaacaacgacaagtacttccagtcagatgtgtttggcaacatcctcaagtatgtgcag
cagcacccgcgcaaatcgcgccttaaagaggcgaagcataagttaattgttattgtagag
gatatccaaagtatagccgatgccaaagaggtgtttgaagggctgggcataaaagaagcc
gtttcggcgtag
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