Cutibacterium acnes subsp. defendens ATCC 11828: TIIST44_07470
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Entry
TIIST44_07470 CDS
T01972
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pad
Cutibacterium acnes subsp. defendens ATCC 11828
Pathway
pad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TIIST44_07470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pad03400
]
TIIST44_07470
Enzymes [BR:
pad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TIIST44_07470
DNA repair and recombination proteins [BR:
pad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TIIST44_07470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
AAA_22
Glyco_tran_WecG
MFD_D3
AroM
Motif
Other DBs
NCBI-ProteinID:
AER05961
LinkDB
All DBs
Position
1587254..1590883
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AA seq
1209 aa
AA seq
DB search
MMVSVGTTTYPMLVAFGGLTSLLSREPVLSHVVEDALTRRTPTLDLQVAASARPAVAAVL
GRSFDGSGRLPVLLVTSTFREAEESVATLKTWLGADSVCYYPSWETLPHERLSPRTDTVG
RRMEVLRRLCGTEGEVPQVVVAPVRSLLQPQVAGLGRIAPVRLAVGEQHDLTELTTELVN
AAYSRVDMVERRGEFAVRGGIVDVFPPVLEHPVRIDFFGDEIEEMTSFAVADQRSTDETH
QELICAPCRELILTDEVRSRAKALLTDHPELADMLERIGNGQAVEGMEALMPALVDEMEL
LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQAPIDLAASGYRSLA
QVRSHCLERGMAWWSMSSFSLDSPATDVLVDDDITSAPQTVNPQLVAVEPWHGDVEAAVK
DLTTRLDDGWTVLLCAEGEGMAKRMSELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRH
GFAADSVKLLVASTGDLAESQDPGGTGERRMPRRRRNQIQPLELKPGDLIVHEQHGVGRY
VEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGD
WRKRKARARKAVREIATELIKLYAARQATKGHAFGPDTAWQRELEDAFAYVETPDQLTTI
ADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFQTF
TERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLVIVD
EEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTF
AGPYDEGQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQ
LEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQLRGRVGRSRER
GYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNLLGGEQSGHIAD
VGFDLYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETERLRLEMYKRLAEV
RSDEEVDAIGAELVDRYGPMPEPVQALLGVARFRLLCRQAGIHEVVPAGRNIRFSPVNLP
ESRVMRLKRLYPGSVVKQTAGLVLVPKPMTATIGGQPLGGADLLKWSADLVTNVLAVDTP
ISTGRPTEP
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
gtgatggtgagtgtcggtaccaccacgtaccctatgctcgtggcttttggcggattgacc
tcccttctttcccgcgaaccggtgctctcccatgttgtggaggacgcccttacccggcgc
actcccacccttgaccttcaggtggcagcttcggcccgcccggcggtggcagccgtactg
ggccggtctttcgacggttccggacgtctgccagtattactcgtgacgagcacgttccga
gaggccgaggaatcagttgctaccttgaagacgtggctcggcgccgactctgtctgttac
tacccatcgtgggagaccttgcctcatgagcgtctgagcccgcgtacggacaccgtcggt
cgacgcatggaggtgctgcgtcggctgtgtggtaccgagggtgaggtgccacaggtggtg
gtcgccccggtgcgctccttgctgcagcctcaggttgccggtctgggacgcatcgccccg
gtgcgcctggcagtgggagaacagcatgaccttaccgagctcacgactgaactcgtcaac
gccgcatatagccgggttgacatggtggaacgccgtggcgaattcgcagtacgtggcggt
atcgtcgacgtcttcccgccggtgctagaacacccggtccgtatcgatttttttggtgac
gagatcgaggaaatgacctccttcgcggtagccgaccagcgatccaccgacgagactcat
caagaactgatctgcgctccttgccgtgagctcatccttaccgacgaggtacgttcccga
gccaaggccttgctgaccgaccatcccgaattagctgacatgttggagcggatcggcaac
ggtcaagctgtcgaggggatggaagctcttatgccggccctcgtcgatgagatggaacta
ctcgtcgacgtcttgcctgagcatgccatggtcgtcctgtcagatccggagatggtgcgc
tctcgtgcggcggatctggttcgcacctccgaagagttcctcggtgctgggtgggcagct
gccgccggcggcggacaagctcctattgacctggctgcttcgggttatcgcagcttggcc
caggtaagatcgcactgtctagagcgcggcatggcctggtggtcgatgtcctccttttct
ctggattctccggcaactgatgtcctcgtcgacgacgacatcaccagtgctccgcaaacg
gttaatccccagctcgtggccgttgagccgtggcatggcgacgtcgaggcagctgttaaa
gatctgacgactcgccttgacgacggctggacggtcctgttgtgcgccgagggtgagggc
atggccaaacgcatgtccgagctgttgggggagcacaacgtcgcggccagactggttgac
gatgtcgacccggatgccaccgagccgtgcgttcaggtcatccgacttcaccagcgtcat
gggttcgcggccgattctgtcaaactgctcgttgcctccaccggtgacctcgccgagtcc
caggatcccggtggcactggcgaacgtcgtatgcctcgacgacgtcggaatcagatccaa
cccctggagctcaagccgggcgatctcatcgtccacgagcagcacggtgtggggcggtac
gtggagatggtgcagcgcactgtcggcggcgctacccgcgagtacctcgttatcgagtac
gcgccctccaaaaaaggtcagcctggtgaccgcctcttcgtgccggtgaactcgctggat
caggtgacccgatatgtcggtggggacgcccccagcctcgaccgtatgggtgggggagac
tggcgcaagcgcaaggcgcgtgcccgcaaggcggttcgtgagatcgccaccgagctgatc
aagctctatgctgctcgtcaggccaccaaggggcatgctttcggccctgacactgcgtgg
cagcgggagttggaggacgccttcgcttacgtcgagacacctgaccagctcaccaccatt
gcggacgttaagcgtgacatggagcaggtcgttccgatggaccggctggtctgtggtgat
gtcggctacggtaaaaccgagatcgcggtacgtgctgcgtttaaggcggttcaggacggc
aagcaggtggcggtgctggtgcccactactttgctggtgcagcagcatttccagaccttc
actgagcgttacgcaggtttccccgtcaaggtggcggccctgtctcgtttccagactgac
accgaagcccgcgaaaccctcgagggacttaaacgcggtaccgtcgacgtcgtcgtcggt
acccatcgcttgctggccaaggaggttgagttcaaggatctcggcttggtcatcgttgac
gaggagcagcgttttggcgtcgagcacaaagaggcgcttaaacgcatgagggtcaacgtc
gatgtgcttgctatgagcgctacgccgatcccgcgcaccttggagatggcggtgacaggc
atccgtgagatgagtacgatcgccaccccaccagaggagcgtcacccggtgctcactttc
gccggaccctatgacgaggggcaggttgttgcggcgatccggcgtgaacttgctcgtgaa
ggtcaggtcttttacatccacaaccgcgtgcagtctattgaaaagacagctgccaagctg
cgtgaactcgttccagaggcgcggattgtcactgcccacggccagatgaacgagaaacag
ctggagcagatcatggtggacttctgggagcgtcgtgccgacgtcctggtatgcacgacg
atcgttgagtcgggtatcgacatttccaccgccaatactctgctcatcgatcgagctgac
cttatggggctgtctcaactgcaccagttgcgtggtcgtgtggggcgctctcgggagcgc
ggctatgcctacttcttgtacccagcggacaagccactctcccaaacggctcacgaccgc
ttggcgacgatggccgcccacaccgacttgggttctggcatggctatcgccatgaaggat
ctggagattcgcggcgccgggaatctgcttggtggtgagcagtccgggcacattgctgac
gttggcttcgatctctatattcgtctggtaggtgacgccgtcgctgagttccgtggggac
agcaccactgccgatgaaccggagatgcgtatcgagctgcccgttgacgccaaccttcca
gttgagtacgtcgaaactgaacgtctacgccttgagatgtataagcgattggctgaagtg
cgcagtgacgaggaggttgacgccatcggggccgagttggtcgaccgttatggaccgatg
cccgagcccgttcaagctttgcttggggtggcgcgattccgcctgctatgtcgacaggcg
ggaatccatgaggtcgttccggctggacgtaacatcaggttttcgccggtgaacctgccg
gaatcccgggtgatgcgcctcaagaggttgtatcccggatcggtggtcaagcaaacagcg
ggtttggtgttggtgcctaaacccatgactgcaacgattgggggacagccattgggcggt
gccgacttgttgaagtggagtgccgacctcgtgacgaacgtcttggctgttgacaccccg
atcagcacgggccggcccactgagccataa
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