Paenibacillus sp. FSL R7-0273: R70723_04810
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Entry
R70723_04810 CDS
T03356
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paea
Paenibacillus sp. FSL R7-0273
Pathway
paea03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R70723_04810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paea03400
]
R70723_04810
Enzymes [BR:
paea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R70723_04810
DNA repair and recombination proteins [BR:
paea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R70723_04810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
AIQ45292
UniProt:
A0A089KAB2
LinkDB
All DBs
Position
complement(1079770..1080654)
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AA seq
294 aa
AA seq
DB search
MPAALKGTIVIDGQEITVTNPDKPLWPEMGITKRIYLQKLAALSPYLLHYCRNRLLTVIR
YPHGVPGMSFYQKNAPQPRPAFIRTAVQDGIEYIVLHGLPELLWLGNLAALEFHPSLHYE
GSDLPCEWMIDLDPSLEVEPRIMEAAALVGEVLKSLGLASVPKTSGATGVQIIVPVRQGI
TFEELRKTGHFIGRYVTEKRPDLFTLERLKKNRGDRIYFDYLQHYGGKTLAAPYTPRARP
GATVSTPLLWEEVARNVSPLDFHLLNIEERLARTGDLIAKVPPQPVGEIAAKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcagccctgaaaggcacaatagtcatcgacggacaggagataaccgttacgaat
cccgataagccgctctggccggagatgggcattaccaagcggatttatctgcagaagctg
gctgccctgtccccttacctcctgcactactgcaggaaccggctgcttaccgtcatccgc
tatccgcacggcgtgccgggaatgtccttttaccagaagaatgcccctcagcccaggccg
gcatttatcaggacagccgtgcaggacgggattgagtatatcgtcctgcacggcttgccg
gagctgctgtggctgggcaatctggctgcacttgagtttcatccttccctgcattatgaa
ggcagcgatctgccctgtgagtggatgattgatcttgatccatcccttgaggtggagccg
cggataatggaggcagccgccctggtcggcgaggtgctcaagtcgctgggcctggcctct
gttcccaaaacctccggggcaacaggggttcagattattgtccccgtgcgccagggaatt
acctttgaggagctgcggaagacagggcatttcatcggacgttatgtgaccgagaagcgc
cctgacctgttcacgctggagcggttgaagaaaaaccggggcgacaggatctatttcgat
tacctccagcattacggcggaaaaacactggccgccccttataccccgcgcgcaaggccg
ggggcaaccgtatccacgccgctgctatgggaagaggttgcccgcaacgtttcaccgctg
gattttcatctgctgaatattgaagaacggctggcccgcactggtgatcttatcgcaaag
gttcccccgcagcctgtaggcgaaattgccgcgaagctcccctga
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