Paenibacillus sp. FSL R7-0331: R70331_04850
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Entry
R70331_04850 CDS
T03357
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paee
Paenibacillus sp. FSL R7-0331
Pathway
paee03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R70331_04850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paee03400
]
R70331_04850
Enzymes [BR:
paee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R70331_04850
DNA repair and recombination proteins [BR:
paee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R70331_04850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
AIQ50921
UniProt:
A0A089KP77
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All DBs
Position
complement(1100141..1101025)
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AA seq
294 aa
AA seq
DB search
MPATLKGTITIDGQEITVTNPDKPLWPEMGITKRIYLQKLAALSPYLLHYCRNRLLTVIR
YPHGVPGMSFYQKNAPQPRPEFVHTAVQDGTTYIVLHGLPELLWLGNLAALEFHPSLHYA
GSELPCEWMIDLDPSLEVEPRIMEAAALVGGVLKSLGLASVPKTSGATGVQIIVPVHQGV
TFEELRKTGHFIGRYVTEKHPGLFTLERLKKHRGDRIYFDYLQHYGGKTLAAPYTPRARL
GATVSTPLLWEEVARNVSPLDFHLLNIEERLARTGDLIAKVPPQPVGEIAAKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccggcaacgctgaaaggcacaattaccattgacggacaggagattaccgtcacgaat
ccggacaagccgctctggccggagatgggtattacgaagcggatttatctgcagaagctg
gcagctctctccccctatctgctgcactactgcaggaaccggctgctgaccgtcatccgt
tatccgcacggcgtgccgggaatgtccttctaccagaagaatgcgccgcagccgaggccg
gagttcgtccatacagccgtgcaggacgggaccacgtatattgtcctgcacggcttaccg
gagctgctgtggctgggcaatctggctgcacttgaatttcatccctccctgcattatgca
ggaagtgaactgccctgtgagtggatgattgatctggatccctcccttgaggtggagccg
cggatcatggaggcagccgccctggtcggcggggtgctcaagtcgctggggctggcctcc
gtacccaagacctccggggcgacaggggttcaaatcattgtgccggtgcatcagggcgta
acctttgaggagctgcggaaaacgggacattttatcggacgttatgtaaccgaaaagcac
cctggcctgtttacgctggagcggctcaaaaagcaccggggcgatcggatttattttgat
taccttcagcattacggcggaaaaacgctggctgcaccctataccccgcgcgcaaggctg
ggggctaccgtatctacaccgctgctatgggaggaggttgcccgtaacgtttcaccgctg
gattttcacctgctgaatattgaagagcggcttgcccgcacaggtgaccttatcgctaag
gtgcccccgcagcctgtaggcgaaatcgctgcaaagctgccttga
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