Paenibacillus sp. FSL R5-0345: R50345_04765
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Entry
R50345_04765 CDS
T03333
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R50345_04765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paef03400
]
R50345_04765
Enzymes [BR:
paef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R50345_04765
DNA repair and recombination proteins [BR:
paef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R50345_04765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AIQ34014
LinkDB
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Position
complement(1074096..1074980)
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AA seq
294 aa
AA seq
DB search
MPAAIKGTITVDGQEITITNPEKLLWPDCGITKRIYLEKLAALSPYLLRYCRDRLLTVIR
YPHGVSGMSFYQKNAPDPLPAFVQTAVHENINYIKLQGLAELIWLGNLAALEFHPSLHYV
GSELPCEWMIDLDPSREVEPRIMEATAIVGTVLTSLGLSSVPKTSGATGVQIIVPIEIGV
TFDGLRKIGHFVGRYVTEKHPNLFTLERLKKNRGDKIYFDYLQHYSGKTLAAPYTPRARP
LATVSTPLLWEEVRQNVSPTDFHLLNIEERLQRMGDLLEKVPPQPVQQLIAKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagccatcaaaggcacaattaccgtagacggccaagagataaccatcaccaac
ccagagaagctgctatggccggattgcggaattacaaaacggatctatctggaaaagctc
gccgccctctctccctacctgctgcgctattgccgcgatcggctgcttactgtcattcgt
tatccgcacggtgtctcgggaatgtccttttatcagaaaaatgcccctgatcctctgccg
gcctttgtccagaccgctgttcacgagaatattaattatatcaagctgcaaggtttagct
gagctgatctggctgggtaatctggctgctctggagtttcacccttctttgcattatgta
ggcagcgagctgccttgtgagtggatgattgatctagacccgtcacgtgaagtcgagccc
cggatcatggaagcaactgcaatcgtagggacggtcttaacctctcttggtttatcttct
gtgcccaaaacctccggcgctacaggggtgcagatcatagtccctatcgagatcggtgtt
acttttgacggattgcgaaaaatcggacactttgtcggtcgttatgtcaccgagaagcac
cccaatttattcaccttagagcgtctgaagaaaaatcgcggagataaaatatattttgac
tacctccagcattacagtggcaaaacattagctgcaccttatacaccacgcgctaggccg
ctcgctactgtatccacaccattgctctgggaggaggttcggcagaacgtatcccctact
gattttcatttgctcaatattgaggaacgcttgcaacgtatgggggatcttctggaaaaa
gtgccgccgcagcctgtccaacagctcatcgctaaacttccatag
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