Paenibacillus sp. FSL R5-0912: R50912_05375
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Entry
R50912_05375 CDS
T03334
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paeq
Paenibacillus sp. FSL R5-0912
Pathway
paeq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R50912_05375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paeq03400
]
R50912_05375
Enzymes [BR:
paeq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R50912_05375
DNA repair and recombination proteins [BR:
paeq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R50912_05375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AIQ39530
UniProt:
A0A089JVK0
LinkDB
All DBs
Position
complement(1214516..1215400)
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AA seq
294 aa
AA seq
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MPKTIRGSITAGGHEIGITNPDKLLWPERGITKQIYLLKLAALSPYLLRYCQGRLLTVIR
YPHGVPGMSFYQKNAPEPLPEFVHTATHENITYIVLQGLPELLWLGNLAALEFHPSLHYA
GSELPCEWMIDLDPSLEVEPRIMEAAATVGEVLRSLGLASVPKTSGATGVQIIVPVEPGV
TFDGLRRVGHFVGRYVTEKRPDLFTLERLKKNRGDKIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVQRNVKPTDYHLLNIEERLARMGDLIAKVPPQRVGDIIAKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagacgatcagaggctccattaccgcaggcggacatgagatcggaattacgaac
ccggataagctgctatggcccgaacgcggcatcaccaagcagatatatttgcttaagctg
gccgcactctctccttatctgctgcgctactgccagggacggctactcacggtaatccgc
taccctcatggtgttccggggatgtccttttaccagaagaatgcccccgagccgctgccg
gaattcgtgcatacagcaactcatgagaatattacctatattgtgctgcaggggctcccg
gagctgctctggctcggcaatctggccgcgctcgaattccatccctcgctgcattatgcg
ggcagtgagctcccctgcgaatggatgattgatctggacccttcgcttgaggtcgagccg
cgcattatggaggcagccgctacggtaggcgaagtactgaggtcactggggctggcctct
gtgcccaagacctcgggtgccaccggagtgcagatcattgttccggtggagccgggagtc
accttcgacggcctgcgccgggtaggtcatttcgtcggccgctatgtcacggagaagcgt
cccgacctgttcacgttggagcgcctgaagaaaaaccgcggggacaaaatctatttcgat
tacctccagcattacggcggcaaaactctcgctgccccatacaccccgcgggcccgtccg
ctggcaacagtctcaacgcccctcctgtgggaggaagtgcagcgtaacgtcaagcctacc
gattaccatctgctgaacattgaggagcgtctggcccggatgggcgatcttatcgccaag
gtccctccgcagcgggtgggtgatattattgccaagctgccctga
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