Paenibacillus sp. FSL R5-0912: R50912_12360
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Entry
R50912_12360 CDS
T03334
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paeq
Paenibacillus sp. FSL R5-0912
Pathway
paeq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50912_12360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeq03019
]
R50912_12360
03009 Ribosome biogenesis [BR:
paeq03009
]
R50912_12360
Enzymes [BR:
paeq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50912_12360
Messenger RNA biogenesis [BR:
paeq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50912_12360
Ribosome biogenesis [BR:
paeq03009
]
Prokaryotic type
rRNA helicases
R50912_12360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AIQ40729
UniProt:
A0A089L789
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All DBs
Position
2843517..2845175
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AA seq
552 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPLAMAGSDLIGQAQTGTGKTAAFGIPL
ISKIVREEEKIVALIMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML
FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP
DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRITAERLLAMVEDGGELNEYKGIAIQLLEQYDSVQLLSAAM
KLLTGDNKDAQIELTPEDPIRAKRRGGKNDIRSGRKPNGGGYGGNRTGSGTGSSSGGGYR
GNRDNASSGGSTRGGYSSGYGSNSGSSYGGGYKGNRDAGAGRDGGASRSADRKPSARPSS
TSTRPAKQDYDV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaattcggcttggagccaaaagtgctacaagcaatcactgaacta
ggatttgaggaagcaacacccattcaggagcaagctattccgcttgcaatggccggatcg
gatctgatcggccaggcgcagacgggtacaggtaagaccgctgctttcgggattcccctc
atttccaagatcgtccgggaagaagagaaaatcgttgcattgattatgacgcctacacgc
gagctggctatccaagtagcggaagaaatcggcaaattgacccgcttcaagggacttcgt
tcactggctatctatggcgggcaggatatcggccgtcaaatccgcggacttaagaagaaa
ccacagatcattattggtactcctggacgtctcctggatcatatcaaccgcaaaaccatc
cgtcttgatgatgtacagaccattgtacttgatgaagctgatgaaatgctggatatggga
ttcatggaggatatccagacgatcctcaagctcgttccggaagaacgtcagacgatgctc
ttctcggctactatgcctcctaacattcaacgtcttgcccagcagttcctgaagaatcca
cagcatgtatccgtaatacctaagcaaatcagcgcaccgctaatcgatcaggcttatatt
gaagttcctgaacgccagaagttcgaagcgctcagccgtttgattgatatggagtcccca
gatctggctatcgtcttcggccgtaccaaacgccgggtagacgagcttgctgaaggattg
cagaaacgcggatattccgctgatggcctgcatggtgacttgtcgcagaatcagcgcgat
gctgtaatgcgcaaattccgtgacggcagtattgatgtactggttgctacagacgttgca
gcccgcggtctggacgtttcgggtgtaactcatgtaatcaacttcgaccttccacaggat
ccggaaagctatgtacaccgtatcggccgtaccggccgtgccggtaaagaaggaacagca
tggtccttcgtgactccgcgtgaaatggatcacctgcatctgatcgaacgtgttacccgt
caccgtattacccgcaaaccgcttcctacaatggctgaggctattgaaggcaaacagcgc
attacagctgaacgtctgctggcaatggttgaggatggcggggaactgaacgaatacaaa
ggtattgccattcaattgctggaacaatatgattctgtacagctgctatccgcagctatg
aagcttcttaccggcgataacaaggatgctcaaatcgagctgactcctgaagatccgatc
cgtgcgaaacgccgcggaggcaagaacgatatccgcagcggacgcaagcctaacggcggc
ggctatggcggcaaccgtacaggctccggaactggcagcagcagtggcggcggctatcgc
ggtaaccgtgataatgccagcagcggcggaagcacacgtggcggctacagcagcggctat
ggcagcaacagcggcagcagctacggcggcggctacaaaggcaaccgtgatgcgggagca
ggacgcgatggcggtgcaagccgcagcgcagaccgtaaaccgtcggcacgcccaagcagc
acaagcacccgtccggctaaacaggattacgacgtttaa
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