Pseudomonas aeruginosa SCV20265: SCV20265_5597
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Entry
SCV20265_5597 CDS
T02971
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
paes
Pseudomonas aeruginosa SCV20265
Pathway
paes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCV20265_5597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paes03019
]
SCV20265_5597
03016 Transfer RNA biogenesis [BR:
paes03016
]
SCV20265_5597
Enzymes [BR:
paes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SCV20265_5597
Messenger RNA biogenesis [BR:
paes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCV20265_5597
Transfer RNA biogenesis [BR:
paes03016
]
Prokaryotic type
tRNA degradation factors
SCV20265_5597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AHC79703
LinkDB
All DBs
Position
complement(5952040..5954754)
Genome browser
AA seq
904 aa
AA seq
DB search
MADWQNLDPEAAREAEKYENPIPSRELILAHLSERGAPATRSQLLDEFGLAGEEPEEALR
RRLRAMERDGQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDDLFLSPTQMR
LVFDGDRALARVSGHDRRGRREGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEV
LIPPGKAGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHV
WPAAVEKEAAKLKPEVAEKDKEKRIDLRQVPFVTIDGEDARDFDDAVYAEAKRGGGWRLF
VAIADVSHYVKVGSALDEEAARRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCE
MTLSKAGKLTGYQFYEAVIHSHARLTYTKVSQLLEHPDSVEAENLRQQLPGVVPHLQQLY
ALYKALLAGRHVRGAIDFETQETRIVFGADRKISEIRPTQRNDAHRLIEECMLCANVATA
RFLQKHAIPALYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIHDRA
DFRLIQTVMLRSLSQAVYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKA
ETPHVQRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERV
GETFPGVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLG
DTTEVVVARVDLDERKIDFELAGNVLSAPIGRKKRNGDKSTNAGKAPKGRKGASVPEVDL
EPALASPDAAVVPRRKAGKVQALLPVAPELLAQAAEMLGNTDVRKSREVKQALLAEARVG
GKDKGGKKGKVVPAGKSAKGKAKDGKPAAAAKPGKPTKHRKGPSKPKADNAPAATGARKR
KAKS
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaaacctcgatcccgaggccgctcgcgaagcggaaaagtacgaaaac
cccatccccagccgggaactgatcctggctcacctatccgagcggggcgctccggcgact
cgctcccagttgctcgacgagttcgggctcgccggcgaggagccggaagaggccttgcgt
cgtcgcctgcgcgccatggagcgcgacgggcagcttatctatacgcgtcgtggcgcctat
gcgccggtggacaagctggacctgatccgcggccgcatcagcgggcaccgcgacggcttc
ggcttcctgatccccgacgatggcagcgacgacctgttcctcagtcccacccagatgcgg
ctggtgttcgacggcgaccgcgccctggcccgggtgtccggccatgaccggcgcggacgc
cgcgaaggccagctggtcgaggtgattgagcgggcccacgagatcgtggtcggccgctac
ttcgaggaaagcggcatcggcgtggtggtcgcggacaacccgaagatccagcaggaagtc
ctgatcccgccgggcaaggccggcaaggccaggcacaaccagttcgtccaggtgcgcatc
gagcaatggccgagcatccaccgccaggcccagggcgagatcgtcgaggtgctcggtgac
tacatggcgccggggatggagatcgaagtcgccctgcgcagctacgatatcccccacgtc
tggccggccgcggtggagaaggaagcggccaagctcaagccggaagtggcggagaaggac
aaggaaaagcgtatcgacctgcgccaggtgcccttcgtcaccatcgacggcgaggatgcc
cgcgacttcgacgacgcggtgtacgccgaggccaagcgcggcggcggctggcgcctgttc
gtggcgatcgccgatgtctcgcactacgtgaaggtcggttcggcgctggacgaagaggcg
gccaggcgcggcaactcggtgtatttccccgagcgggtgatcccgatgctgccggaggtg
ctgtccaatggtctctgctcgctgaatccgctggtcgaccggctggccatggtctgcgag
atgaccctgtccaaggctggcaagctgaccggctaccagttctacgaagcggtgatccac
tcccatgcccgcctgacctacaccaaggtcagccagttgctcgagcaccccgacagcgtc
gaggccgagaacctgcgccagcagttgcccggcgtggtgccgcacctgcagcagctgtat
gcgttgtataaagcgctgctggccggccgccatgtccgcggcgcgatcgatttcgagacc
caggaaacccgcatcgtcttcggcgccgaccggaagatctcggaaatccgcccgacccag
cgcaacgatgcgcaccgcctgatcgaagagtgcatgctctgcgccaacgtggcgaccgca
cgcttcctgcagaagcacgccatcccggcgttgtaccgggtgcatgacggcccgccgcag
gagaaactcaacaacctgcgccagttcctcggcgagctggggttgagcctcggccgcggc
aaggccgcgccgaccccgggcgactaccaggagttgctggagaagatccacgaccgcgcc
gacttccgcctgatccagacggtcatgctgcgttcgctcagccaggcggtgtacagcccg
gacaacaatggccacttcggcctcaactacgacgcctacacccacttcacctcgccgatc
cggcgctacccggacctgctggtgcatcgtgcgatccgcagtgtgatccgctccaaggcg
gagactccgcacgtgcagcgggccggcgcggcgagcatgcccaaggcgcgtatctatccg
tacgacgaattgcgcctggaccagttgggcgagcagtgctcgatgaccgagcggcgtgcc
gacgaggccacccgcgacgtgaccaactggctgaagtgcgaatacatgcgcgagcgggtc
ggcgagaccttccctggcgtaatcactgcggtcaccggtttcggtctgttcgtcgagctg
accgacatcttcgtcgaaggcctggtccatgtgaccgcgctgcccggcgattactatcat
ttcgacgccgtgcaccatcgcctcagcggcgaacgcaccgggcgcagcttccgtctcggc
gacaccacggaagtggtagtggcgcgggtcgacctggacgagcggaagatcgatttcgag
ctggccggaaacgtgctgagcgcgccgatcggacgcaagaagcgcaacggcgacaagtcg
acgaacgccggcaaggcgccgaaggggcgcaagggcgcatccgtgcccgaggtcgacctg
gagccggcgctggccagtcccgacgccgcggtggtgccgcggcgcaaggccggcaaggtg
caggcgctgctgccggtcgcgccggagctgctggcgcaggccgcggagatgctcggcaac
accgacgtgcgcaagagtcgcgaggtgaagcaggcgctgctcgccgaggcgcgtgtcggc
ggcaaggacaagggcgggaagaagggcaaggtcgttcctgcgggcaagagcgcgaagggc
aaggccaaggacggcaagcccgccgctgccgccaagccgggcaagccgaccaagcatcgc
aaggggccttccaagccgaaggccgacaacgctccggccgccaccggggcgcgcaaacgt
aaggccaagtcatga
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