Pseudomonas aeruginosa PA38182: BN889_02343
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Entry
BN889_02343 CDS
T03031
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paeu
Pseudomonas aeruginosa PA38182
Pathway
paeu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN889_02343 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paeu03400
]
BN889_02343 (ligD)
Enzymes [BR:
paeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN889_02343 (ligD)
DNA repair and recombination proteins [BR:
paeu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN889_02343 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CDI90401
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All DBs
Position
2424846..2425724
Genome browser
AA seq
292 aa
AA seq
DB search
MRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGGELFFQKHA
ARLKIPGIVQLDPALDPGHPALLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVL
DLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLVPLERRHGWDEVKDFA
QAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVF
REELDSLQGANQWNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQLGRG
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcatcagccatccgcagcggctgatcgacccgtcgatccaggccagcaagctggaa
ctcgccgagttccatgcgcgctacgccgacctgctcctgcgcgacctgcgcgagcgcccg
gtgtcgctggtgcgcggccccgacggaatcggcggcgaactgttcttccagaagcacgcg
gcgcgcctgaagatccccggcatcgtccagctcgacccggcgctcgatcccggtcatccg
gcgctgttgcagatccgcagcgccgaggcgctggtcggcgcggtgcagatgggcagcatc
gaattccatacctggaacgccagcctggccaacctggagcggcccgaccgtttcgtcctc
gacctcgacccggacccggcgctgccgtggaagcgcatgctcgaagcgacccagctgagc
ctgacgttgctcgacgagctgggcctgcgcgccttcctcaagaccagcggcggcaagggc
atgcacctgctggtgccgctggagcgccggcatggctgggacgaggtcaaggatttcgcc
caggccatctcccagcacttggcgcgcctgatgccggagcgtttctcggcggtttccggg
ccgcgcaaccgggtcggcaagatcttcgtcgactacctgcgcaacagccgcggcgccagc
accgtggccgcctactcggtgcgtgcccgcgaagggttgccggtgtcggtaccggtgttc
cgcgaggaactcgactcgctgcagggcgccaaccaatggaacctgcgcagtctgccgcag
cgcctcgacgaactcgccggcgacgatccctgggccgactacgccggcacccgccagcgc
atcagcgcggccatgcggcgccagctcgggcgcggctga
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