Paeniglutamicibacter sp. Y32M11: KUF55_09145
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Entry
KUF55_09145 CDS
T07362
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paey
Paeniglutamicibacter sp. Y32M11
Pathway
paey03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KUF55_09145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paey03400
]
KUF55_09145
Enzymes [BR:
paey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KUF55_09145
DNA repair and recombination proteins [BR:
paey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KUF55_09145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QXQ12002
LinkDB
All DBs
Position
2080216..2082729
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AA seq
837 aa
AA seq
DB search
MASRNSGETVSIAGRVLRVSNLDKVLYPETGTTKGEVLDYYARVAPVLVPLAARRPATRK
RWVNGVGTQEKPGKVFFRKDLEDSAPDWIPRGTIKHKDHENIYPLVDDAAVLTWLGQLAA
LEIHVPQWRFDREMAPANPDRMVLDLDPGPGVDLAQCAVVALLCREVLSGMGLEAYAVTS
GSKGIHLYAGLDGTHTSDQISQVARELARHLQQDHPELVVAEMKKSLREGKVFIDWSQNN
AAKTTICPYSLRGRTRPMVAAPRTWEEIGEPGLRQLDFHEVLERVETGFDPISTLGRAVP
PTSDRLETYRSKRDAASTPEPIPAPAAPVRPSGGEADFVIQEHHARALHWDFRLEHDGVL
VSWAVPKGPPLQSGVSRLAVMTEDHPLDYGEFEGTIPAGQYGAGTVEIWDSGSCRIEKWN
EGAEVIAELRGRPDGGLGGVARRYALIHAPRMGNEKNWLLQLMKEQPGEDGTGQDAGEGR
GTTRHADKSSGAAKSSAQSPERAKQDLPRAMLATSGKPGELDEDESWAYEMKWDGYRTVV
GVVDRQVILRSRNGNDLTAQYPELQELADGAPEGAVLDGEIVALDSNGRPDFGLLQTRSE
DGKKNGAGAKAPIAAVHLMLFDALRLPAVDGKRGKAGERPGTVEDLMSQPYLERRRRLAE
QVAEGKHIHLPPVHDGTLEEAMEASAELGLEGVVAKQASSTYRPGKRSKSWVKFKNELHQ
EVVVIGWRQGNGARGDTLGSLLLAVNEDGALHYVGRVGTGFSGDELRRIRSELEPHRRKT
PAAKDVPGIDRTDAIWVSPKLVGEVRYTERTRGKRLRHPVWRGWRQDKEPAAVRWEA
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgagaaattccggggaaacggtatcgattgcaggacgagtgctgcgggtcagc
aatctcgacaaagtgctctacccggagacggggaccaccaagggggaggtgctggactac
tacgcccgggttgccccggtgctcgttcccctggcggcccggcggccggcgacccgcaaa
cgctgggtcaacggggtcggaacgcaggaaaagccgggcaaggtgttttttcgcaaagat
cttgaggactcggcccccgactggatcccgcggggaaccatcaagcacaaggaccacgag
aacatctatccgctggtggacgatgcagcggtgctcacgtggctgggacagctggcggca
ctggagatccatgtgccccagtggcgtttcgacagggagatggccccggcgaatcccgac
cgcatggtgctggacctggacccgggtccgggcgtcgatctggcccaatgcgccgtcgtt
gcgttgctgtgccgcgaggtgctctccggcatgggacttgaggcatatgccgtgacgtcc
ggttccaaggggatccacctgtacgccggcctcgacggaacccatacctcggaccagatc
tcacaggttgcccgcgagctggctcgacacctccagcaggatcatccggaactggtcgtg
gcggagatgaagaagtccttgcgcgagggcaaggtgttcattgactggagccaaaacaac
gcggccaagaccaccatctgcccgtattcgctgcgcggacgaacgcggccaatggttgcc
gcaccacgcacctgggaggagatcggggaaccgggccttcgccaactcgacttccacgag
gtgctcgaacgcgtggagacggggttcgacccgatttcgacgctgggccgggcagtgccc
ccgacatccgatcggctggagacctaccggtccaagcgggacgcggcatccactccggaa
ccaattcccgcaccggccgcaccggtgcggccttccgggggcgaggcggactttgtgatc
caggaacaccacgccagggccctgcactgggacttccggctggagcacgacggcgtcttg
gtctcctgggccgtgcccaagggcccgccccttcagagcggtgtcagccgtctggcggtg
atgaccgaagaccacccgctggactacggagaatttgaggggacgattcccgcgggccaa
tacggtgccgggaccgtggagatctgggacagcggttcctgccggatcgagaagtggaac
gagggcgcagaagtcatcgccgagctgcgggggagaccggacggagggctcggcggggtg
gcacgacgctacgcgctgatccatgccccgcgcatgggcaacgagaagaactggctgctc
caactcatgaaggagcaacccggcgaggacggcaccgggcaggacgcaggtgaaggccgt
ggaacgaccaggcacgccgacaaatcctccggcgcagctaaatcttctgcgcagtccccg
gagcgcgcgaaacaggacctgccacgcgccatgttggccacctccggaaaacccggtgag
ctcgatgaagacgagtcctgggcctacgaaatgaagtgggacggctaccggaccgtggtc
ggcgtcgtggaccgacaggtcattttgcgcagccgcaatggcaacgatctgaccgcccag
tacccggagctgcaggagctcgcggacggggctccggagggtgcggtcctggacggggag
atcgtggcattggacagcaacggccgaccggatttcggcctgctgcagaccaggagcgaa
gacggaaagaagaacggtgcaggtgccaaggcgcccatcgccgcggtgcacctgatgctg
ttcgacgcgcttcggttgccggccgtggatgggaaacggggcaaagccggggagcgccca
ggcacggtggaggatttgatgtcccagccctacctcgagcggcggcgacggctggccgaa
caggtcgccgaaggcaaacacatccatctaccccctgtccacgatggaacgttggaagag
gcaatggaagccagtgccgagttgggcctggaaggcgtggtggccaagcaagcgtcctcg
acctaccgcccgggcaagcgcagcaaaagctgggtcaagttcaagaacgaactgcaccag
gaggtggtggtcattggctggcggcagggcaacggcgcacgcggcgacacccttggctcg
ttgctgctggcggtgaatgaagatggtgcgttgcactatgtcgggcgagtgggaaccggg
ttttccggcgacgaactgcgtcgaatccgtagtgaactcgagccacaccggcgcaagacc
cctgctgccaaagatgtgcccggcatcgaccgcaccgatgccatctgggtctcacccaaa
ttggtcggcgaggtccggtacaccgaacgaacccggggcaagaggctgcgccacccggtg
tggcgcgggtggcgccaggacaaggaaccggcagcggtgcgatgggaagcttga
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