Planktothrix agardhii: NIES204_15340
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Entry
NIES204_15340 CDS
T05658
Name
(GenBank) transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pagh
Planktothrix agardhii
Pathway
pagh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES204_15340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagh03400
]
NIES204_15340
Enzymes [BR:
pagh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES204_15340
DNA repair and recombination proteins [BR:
pagh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NIES204_15340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBD54244
UniProt:
A0A2Z6CDE5
LinkDB
All DBs
Position
complement(1811530..1815045)
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AA seq
1171 aa
AA seq
DB search
MTFSSIVRALGRSPLTAELLTKLNKSQSLYLNGLSRIPKGLVASTLAQESGLNLFVVTAT
LEEAGRWATQLEAMGWATVQFYPTSEASPYESVTSEEMTWGQMQVLAELAGRLQTPSAVP
MAIVATERSLQPHLPPVSAFQPYCLKLYRGMTSAGKTLDEQFAKLGYERVSLVETEGQWS
RRGDIVDIFPVASEWPVRLEWFGDELEQIRELDPITQRSLDKIENLILTPTNFDVIIQGN
LASAETLISQIIPPIPKPEFQLDNNNYKSPKSYHPLLGLAFEQPACLLDYLTDTTLIVID
EIDQCCAHSDRWLEHIEEQWQALPEKPPKIHRLFTESLQQIESFDKLYLSEIGDYQPSLV
NITNVPSLNLSSRPVPATPHQFAKLAELIRYERQRYFSIFIVSAQPSRSVALLSEHDCPS
KFIPNPRDYPAIDSLIKNTPVALKYTGLAELEGFILPTFRLVLITDREFYGQHSLATHGY
IRKRRRAASKQVELNKLRPGDFVVHRQHGVGRFTKLESLVINNETREYLVLQYDDGTLRV
AADQVGSLSRFRSTGGKVPQLNKLSGQAWEKTKEKVKKTLKKLAVDLLKLYAQRAQQTGY
AFPPDMPWQQELEDSFSYQPTPDQIKSTQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRA
IFKAVTAGKQVALLAPTTILTQQHYHTIKERFSPYPIEVALINRFRTNSEKQEILKRLAT
GEIDIIVGTQSLLGKGVHFKDLGLLVVDEEQRFGVNQKEKIKTLKTHVDVLTLTATPIPR
TLYMALSGIREMSLITTPPPSRRPIQTHLSPLNLEIVRTAIRQEIDRGGQVFYVVPRIEG
IEEKSAQIREMIPGVRLAIAHGQIDASELESIMLTFSSGDADVLVCTTIIESGLDIPRVN
TILVEDSHRFGLGQLYQLRGRVGRSGVQAHAWLFYPTTADGRVNLTDDARKRLRAIQEFA
QLGSGYQLAMRDLEIRGAGDILGAEQSGQMDVVGFDLYSEMLQEAIQEVRGQEIPQVDDT
QIDLSLTAFIPSDYIPDLDQKMSAYRSVAACKSRDELSRIEEDWCDRYGPVPTPARQLIR
IMELKQIAKKLGFSRIKPDGKQHILLETPMEEPAWNLLKANLSESLHTRFVYSKGKVTVR
GLAVLSADKQLESLIGWLAQMQTALPENSVV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgacattttcctccatcgtgcgtgcattggggcgatcgcccttaacggctgaactcctg
accaaactgaataaatcccagtccctctacctcaatggtctgtctcgcattcccaagggg
ttagtcgcttcaactttagctcaggagtcgggattaaatttatttgtggtgacggcgacc
ctagaggaagcgggacggtgggcgactcaactggaggcgatgggatgggccacagttcag
ttttaccccacttctgaagcgtcgccctacgagtcggtgacttccgaggagatgacctgg
ggacaaatgcaggtgttagcggagttggcgggacggttgcagacaccttcggccgtaccg
atggcaattgtggccacagaacggagtttacagccccatttacctccggtttcggcgttt
caaccctattgtttaaaactgtatcgggggatgacctcggccggaaaaacccttgatgaa
caattcgccaagttaggctatgagcgcgtatccttggtggaaaccgagggccaatggagt
cggcggggggatattgtggatattttcccggtggcctcggaatggcctgtgcgtttagaa
tggtttggggatgagttagaacaaattcgagaactagatcccatcacccaaagatcctta
gataaaattgaaaatctaattctcaccccgaccaattttgatgtaattattcaaggtaat
ttagcctcggctgaaaccttaatttcccaaattattccccccatccctaaaccagaattt
caactcgataataataactataaatcccctaaatcctatcatccattattaggtttagct
tttgaacaacccgcttgtttattagactatttaaccgatacaactttaattgtgattgat
gaaattgatcaatgttgtgcccatagcgatcgctggttagaacatattgaagaacaatgg
caagccttacccgaaaaaccgcctaaaattcatcgtttatttaccgaatctttgcaacaa
attgaatcctttgataaactctatttatctgaaataggggattatcaacccagcctagtt
aatattaccaatgttcccagtttaaacctatcttctcgtccagttccggcaactccccat
caatttgctaaactggcggaattaattcgttatgagcgacaacgatatttttctatattt
attgtttccgcccaacctagtcgatcggttgccctattatcagaacatgattgcccctca
aaattcattcctaacccccgtgattatcccgccattgatagcttaattaaaaataccccc
gtcgccttaaaatataccggacttgccgaattagaagggtttattttacccacttttcgg
ttagttttaattactgaccgagaattttatggtcagcattccctagccacccatggttat
attagaaaacgacgacgggcggcatcaaaacaggttgaactgaataaactccgaccaggg
gattttgtggttcatcgtcaacatggggtagggagatttactaaattagaaagtctagtg
attaataacgaaactagggaatatttggtcttacaatatgacgatggtacgttaagagtt
gccgccgatcaagttggcagtttatcgagatttagaagtaccgggggcaaagttccccaa
ctgaataaacttagcggacaagcttgggaaaaaaccaaggaaaaagtcaaaaaaacctta
aagaaattagccgtagatctattaaaattatatgcccaacgcgcccaacaaactggctat
gcgttcccccctgatatgccttggcaacaggaactagaagactccttttcctatcaacca
acccccgatcaaattaaatcaacccaagacgtgaaacgggatatggaaagcgatcgcccc
atggataggttagtttgtggagatgtaggatttggcaaaacagaagtcgcaattcgggct
atttttaaagccgttactgctggaaaacaggtggcattattagcccccactacaatttta
acccaacaacattatcataccataaaagaacgattttctccctatcccatagaagttgct
ttaattaatcgttttcgcaccaattccgaaaaacaagagatattaaaacggttggcaacg
ggagaaattgatataattgttggcactcaatccttactgggaaaaggggtacattttaag
gatttagggttattagtcgttgatgaagaacaacgttttggagtgaatcaaaaggaaaaa
attaagacattaaaaacccatgttgatgtcttaactttaaccgctactcccattcctcgt
accttatatatggcattatctgggattcgagaaatgagtttaattaccactcctcctcct
tcccgtcgcccaattcaaacccatttatctcctttgaatttagaaatagttagaacagca
attcgtcaagaaatagatcgggggggacaggtgttttatgttgtgcctagaattgaagga
attgaagaaaaatctgcccaaattcgagagatgattcctggggtgagattagcgatcgcc
cacggacaaatagatgcctccgaattagaatcaattatgttaacatttagttccggggat
gcggatgttttagtctgtacaaccattattgaatcggggttagatattcccagagttaac
acgattttagttgaagattcccaccgtttcggcctaggtcaattatatcaattacgcggt
cgggttggacgttctggggtgcaagctcacgcctggttattctatccgacaacggccgac
ggacgggttaatttaaccgatgatgctcgcaaaagattgagagcaattcaagaatttgcc
cagttaggatcgggctatcaattagctatgcgagacttagaaattcggggcgcgggagac
attttaggggccgaacaatcgggtcaaatggatgtggtagggttcgatctttatagtgaa
atgttacaagaagcaattcaagaagtccggggtcaagaaattccccaggttgatgatact
caaattgacttgagtttaacagcttttattccttccgattatataccggatttagatcaa
aaaatgagtgcttatcggtcagttgctgcttgtaaaagtcgggatgaattatctcgaatt
gaagaagattggtgcgatcgctatggcccagttcctaccccggcgcgtcaattaattaga
attatggaactcaaacaaattgctaagaaattaggcttttctcggattaaacccgacgga
aaacaacatattttattagaaacccccatggaagaacccgcatggaatttattaaaagcc
aatttatcagaaagtttacatactcggtttgtgtatagtaaaggtaaagttacggtgagg
ggattagcggtattaagtgcggataaacagttagaatctttaataggttggttagcccaa
atgcaaaccgctttaccggaaaattctgttgtttag
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