Paenibacillus sp. IHB B 3084: ASL14_05675
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Entry
ASL14_05675 CDS
T05348
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paih
Paenibacillus sp. IHB B 3084
Pathway
paih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ASL14_05675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paih03400
]
ASL14_05675
Enzymes [BR:
paih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ASL14_05675
DNA repair and recombination proteins [BR:
paih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ASL14_05675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ALP35731
UniProt:
A0A0S2S1Y6
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All DBs
Position
1234835..1235725
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AA seq
296 aa
AA seq
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MGQAIKGIITIEGLEIPITNPDKPLWPEAGVTKALYLRKLAVLAPFLLKYSHNRLLTVIR
WPHGIHGDFFYQKNAPQPRPDYIETFQHDGIEYMVLGTLPQLLWLGNQAALEFHPSLHQA
GSTLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLQSVPKTSGATGVQIIVPIRTGI
TFDELRSIGLLVGQFVTEKYPHLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWDEVRQDVSPLDYHLLNIEERLNQVGDLIAKIPSQPIEDVLKHMRAK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagctattaaaggcatcattaccatcgaaggtctggaaattcctatcaccaac
ccggataaacccctgtggcccgaagctggcgtcaccaaagcgctgtatcttcgcaagctt
gcggtgctggccccttttctgctcaaatatagccacaaccgtttactgactgtcatccgc
tggccgcacggcattcacggggattttttttaccagaaaaatgccccgcagccccggccg
gactacatcgaaaccttccagcatgacggtattgaatatatggtgctcggcacactgcca
caactgctatggctcggcaatcaggccgcgctggaatttcacccatccctgcatcaagcg
ggcagcacgctgccgtgtgaatggatgattgaccttgatccgtccagagaagtggagcca
cgcattatggaagcggcgtccatcgtcggggaggtgctggcttcgcttggtttgcaatct
gtacccaaaacgtccggggccacgggtgtgcaaattatcgtcccgatccgcacaggcatc
accttcgacgagcttcgcagcatcggtctgctggtgggacagttcgtaaccgaaaaatac
ccgcatctattcacactggaacggttaaaaaaggatcggggaacggctatctattttgat
tatttgcagcattatcaaggaaaaaccctggccgctccctataccccgcgagcacgccct
ggcgctacggtatccaccccactgacatgggacgaggtgcgacaagacgtatcgccgctt
gactatcatttgctgaatattgaggaacggctaaatcaggtgggcgacttgatcgccaaa
atcccttcccagcccatcgaggatgttctcaagcatatgcgcgccaaataa
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