Photorhabdus akhurstii: B0X70_02085
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Entry
B0X70_02085 CDS
T07392
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pakh
Photorhabdus akhurstii
Pathway
pakh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pakh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B0X70_02085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pakh03021
]
B0X70_02085
03400 DNA repair and recombination proteins [BR:
pakh03400
]
B0X70_02085
Enzymes [BR:
pakh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B0X70_02085
Transcription machinery [BR:
pakh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B0X70_02085
DNA repair and recombination proteins [BR:
pakh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B0X70_02085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QXF32097
LinkDB
All DBs
Position
462750..466970
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKNLDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEVKDGEGNITVNTSLIDTTIGRAILWMIVPRGLPYSLVNQPLGKKA
ISRMLNTCYRVMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVTNRDGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEESSVDSIKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGSLKL
FNAKSVTNSAGKLVITSRNTELCLIDEFGRTKESYKVPYGAVLGKGDGETVNGGETVANW
DPHTMPVVSEVSGIIRFADMIDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLDDGVSISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEVSGIVSFGKETKGKRRLVISPLDGGDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSEFLEGEQVEYARVKVANRKLEQEGKVPATYGRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQLNESSE
APQVSVDEATANLAELLNAGFGGDKK
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagatatgatccgttcgtggtcattcggtgaagtgaaaaag
ccggaaacaattaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcccgt
attttcggaccggtaaaagattatgagtgcttgtgtggtaaatacaagcgcttgaaacac
cgtggtgtaatttgtgagaagtgtggtgtagaagttacccagactaaagttcgtcgtgaa
cgtatgggtcacattgaactggcttctccaacggcacatatctggttcctgaaatcattg
ccatcccgcatcggtttgttgctggatatgccactgcgtgatattgagcgtgtactgtac
ttcgaatcctatgtggttgtagaaggcggtatgaccagcctggaacgcagtcagatcctg
acagaagagcaatacttggatgcactggaagagtttggtgatgaattcgatgcgaagatg
ggagcggaagctatccagtctttgctgaaaaatctcgatctggaaaatgagtgtgaaacg
ttgcgtgaagagttaaatgaaactaactctgaaactaaacgtaagaagctgaccaaacgt
attaaactgttggaagcctttattcagtctggcaacaagccggaatggatggttctgacg
gttctgccagttctgccaccggatttacgtccattggttccactggatggcggccgtttt
gccacttcagatctgaacgatctctatcgtcgtgttattaaccgtaacaaccgcttgaag
cgtctgttggatctggctgcgccagatatcatcgtgcgtaacgaaaaacgtatgttgcag
gaagcggttgatgccttgctggataacggtcgtcgcggtcgtgccattaccggttctaac
aaacgtccgttgaaatccttggctgatatgatcaagggtaaacaaggtcgtttccgtcag
aacttgttgggtaaacgtgttgactattctggtcgttctgtaatcacggtaggtccttac
ctgcgtctgcatcagtgtggtctgcctaagaagatggcgctggagctgtttaagccattc
atctacggcaagctggaactgcgtggtttagcgactacgattaaagccgctaaaaagatg
gttgagcgtgaagaggcggtggtatgggatatcctggatgaagttattcgtgaacacccg
gttctgctgaaccgtgcgccgacacttcaccgtttgggtattcaggcgttcgaaccggtt
ctgatcgaaggtaaagcgattcagttgcacccactggtgtgtgcggcatataacgccgac
ttcgacggtgaccaaatggctgttcacgtaccgctgacactggaagcccagttagaagcg
cgtgcgctgatgatgtctaccaacaacatcttgtctccagcgagcggtgagccaatcatc
gttccatctcaggacgttgttctgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactgggcctaaagaagctgaacgcgtataccgcgcaggg
ctggcttctttgcatgcccgcgttaaagtgcgtatcactgaagaagtgaaagatggcgaa
ggcaatatcacagttaataccagtttgattgatacgaccattggtcgtgcaatcctgtgg
atgattgtaccaagaggtctgccttactcgctggttaaccaaccactgggtaaaaaagct
atctccagaatgctgaacacctgttaccgcgtgatgggcctgaaaccaacggttattttc
gctgaccagatcatgtataccggctttgcctacgctgcgcgttcaggtgcgtctgttggt
atcgatgacatggttatcccagagaaaaaagcgggcatcattgcagaagccgaagcagaa
gttgctgaaattcaggaacagttccagtctggtctggttacagccggtgaacgttataac
aaagttatcgatatctgggctgcggcaaacgagcgtgttgctaaggcgatgatggaaaac
ttgtctactgaaacagtcactaatcgtgatggagaagaagagcaacaagtttccttcaac
agcatctttatgatggctgactctggtgcgcgtggttctgccgctcagatccgtcagttg
gcgggtatgcgtggcttgatggctaagccagacggctccatcatcgaaaccccaattacc
gcgaacttccgtgaaggtttgaacgtactccagtacttcatttcaacccacggcgctcgt
aaaggtttggcggataccgcactgaaaacagcgaactccggttacctgactcgtcgtctg
gttgacgtggcgcaagacttggttgttacagaagatgactgtggtacgcacgacggtatt
ctgatgacgccggttattgaaggtggtgatgttaaagagccgctgcgtgagcgtgtattg
ggtcgtgtgacagcggaagatgttctgaaaccaggtactgctgacattctggtgccgcgt
aatacattgctgaacgagaaatggtgtgatctgttagaagaaagctccgttgacagcatt
aaagtacgctccgttgtaagttgtgaaactgacttcggtgtttgcgcgaactgttatggt
cgtgaccttgctcgcggacacatcatcaataaaggcgaggcggttggtgttattgcggct
cagtccatcggtgagccgggcacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagccgaatccagcattcaggtgcgtaacaaaggtagcttgaaactg
tttaacgctaaatccgtgaccaactccgcaggtaaattggtgattacttcccgtaacacc
gaactgtgtttgatcgacgaattcggccgtactaaagagagctataaagtaccttacggt
gcggtactgggtaaaggtgatggcgaaacagttaacggcggtgaaaccgttgctaactgg
gacccacataccatgccggttgtcagtgaagtatctggtatcatccgtttcgctgacatg
atagatggtcaaaccattacccgtcagacggacgaactgacaggtctatcttcactggtt
gttctggatagtgcggagcgtaccggtagtggtaaagacttgcgtccagcgctgaaaatc
gttgacgccaatggtgatgatgtattgattccaggtactgatatgcctgctcaatatttc
ctgccgggcaaagcgattgttcagttagacgatggcgtcagcatctctgcgggtgacacc
ttagcgcgtattcctcaggaatccggcggtacgaaagatattaccggtggtctgccacgt
gttgctgacttgttcgaagcgcgtcgtccgaaagagcctgctatcctggctgaagtcagc
ggtattgtctccttcggtaaagaaaccaagggtaaacgccgtctggttatctccccatta
gatggtggtgatgcttacgaagagatgatccctaaatggcgtcagctcaacgtgttcgag
ggcgaagtggttgaacgtggtgacgtgatctctgatggtccagaatctccacacgacatc
ttgcgcctgcgtggtgttcatgcggttacccgttacatcaccaacgaagttcaggaagtt
taccgcctgcaaggggttaagattaacgataaacacattgaggttatcgttcgtcagatg
ctgcgtaaagcgaccattgaaagcgcaggtagttccgagttcctggaaggcgaacaggtt
gaatatgcccgcgttaaagtggcaaaccgtaagctggagcaagaaggtaaagtgcctgca
acttatggccgtgacctgttgggtatcaccaaagcgtctctggcaactgaatccttcatc
tctgcggcatcgttccaggaaacgacccgcgtactgactgaggctgcggttgcgggtaaa
cgtgatgaactgcgtggcttgaaagaaaacgtcatcgtcggtcgtctgatccctgccggt
accggttatgcttaccatcaggatcgcatgcgtcgtcgtcagttgaatgagtcttctgaa
gcaccacaagtgagtgtagatgaagcaactgcaaacttggcagaactattgaatgccggt
tttggtggcgataagaagtaa
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