Candidatus Phytoplasma australiense: PA0006
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Entry
PA0006 CDS
T00752
Name
(GenBank) Putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pal
Candidatus Phytoplasma australiense
Pathway
pal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PA0006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pal03019
]
PA0006
Messenger RNA biogenesis [BR:
pal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PA0006
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Motif
Other DBs
NCBI-ProteinID:
CAM11341
UniProt:
B1V9E0
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Position
8338..10023
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AA seq
561 aa
AA seq
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MIDIKFFALGGLGENGKNFYLLQINESCFIIDAGLKYPSVSLYGIDAMIADYHKLESMKD
KIKGVFLTSAFETNLGAVPYFIKEYNLPIYTSYFTMEVLKNYFASHKINYQNLNLNVIKT
NEILRFKDVEISFFATSQLIPETLGISFQTSLGAIVYTGELKSLESQNQFFQTNLTQLTK
STQQKVLAFLPASQRAFNYSYDESQNNFDHKISNYFINYSLKPKGIIVVASLAPDLFKIQ
KAITLACKLNFKVAILGNENEAIIDVALKKEFLKIPDANFVKLNTFEEHTKHNQLVVFLF
GKHFATLQRLQQMANKTDPKIHLNSQDLILLMSQDMAGIAKMQSQTLDTLSRHNIKSHLL
IKDLSLSESNYEQNLKIMLNFLKPRYIIPVMGEYRHQYQVKKIAQKNGFKSNQIFLLENG
SIWRASSDKEPFVENKVFSLNEILIDGTPVADGKEFIMKDREFLAADGVVILVVNVNAKY
KKIVGEPKIVSKGFLEQTETNNIFAKLKDVFDEQSAVFLTNKYLKWNDFKKHIRESISKF
LFKETKKRPIIIPIFISVRNE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgattgacattaaattttttgctttaggtggtttgggcgaaaatggcaaaaatttttat
ctattacaaattaatgaatcttgctttattattgatgctggactaaaatatcctagtgtt
tctttgtatggcatagatgccatgatagctgattaccataaattagaaagcatgaaagat
aaaattaaaggtgtttttttaacttctgcttttgaaactaatttaggtgctgtaccatat
tttattaaagaatataatttacctatttatacttcttattttacgatggaagttttaaaa
aattattttgcaagtcataaaattaattatcaaaatctaaatttaaatgttataaaaaca
aatgaaattcttcgctttaaagatgtagaaatttctttttttgctacatctcaattaatc
ccagaaacattaggcatttcttttcaaaccagtttaggtgccattgtttatacaggagaa
ttaaaatctttagaatctcaaaatcaatttttccaaacaaatttaactcaattaactaaa
tcaacgcaacaaaaagttttagcatttttgcctgcctcacaaagagcttttaattattct
tatgatgaatctcaaaataatttcgatcacaaaataagtaattatttcatcaattattct
ttaaaacctaaaggcattatcgttgttgcctctttagctcccgatctctttaaaatccaa
aaagcaattactttggcttgtaagttaaattttaaagtagctattttaggaaatgaaaat
gaagcaattattgatgtggctttaaaaaaagaatttttaaaaattcctgatgctaatttc
gttaaattaaatacttttgaagagcatactaaacataatcaattagtagtttttctcttt
ggaaaacattttgcaactttacaacgtttgcaacaaatggcaaataaaacagatcccaaa
attcacctaaattctcaagatttgattttattaatgtctcaagacatggcaggaattgca
aagatgcaatcccaaactttagatactttatctcgtcataatattaaatcccatctttta
attaaagatttatcgttgtctgaaagtaattatgaacaaaatttaaaaataatgttaaat
tttttaaaacctcgctacatcattcctgttatgggagaatatcgccatcagtatcaagta
aaaaaaatagctcaaaaaaacggttttaaaagtaatcagatctttttattagaaaacgga
tctatttggcgtgcctcctctgataaagaaccttttgttgaaaataaagttttttcgtta
aacgaaattttaatcgatggcactcctgttgctgacggaaaagaatttattatgaaagac
cgtgaatttttagccgctgatggtgttgttattttagttgtgaatgttaatgctaaatat
aaaaaaattgtgggagagccaaaaatagttagtaaaggttttttagaacaaacagaaact
aataatatttttgctaaattaaaagatgtttttgatgaacaaagtgccgtttttttaaca
aataaatatcttaaatggaatgattttaaaaaacacattagagaatctatctctaagttt
ttattcaaagaaaccaaaaaaagaccaattataattcctatttttataagtgttagaaat
gaataa
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