Pseudomonas alcaligenes: A0T30_13915
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Entry
A0T30_13915 CDS
T04318
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
palc
Pseudomonas alcaligenes
Pathway
palc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0T30_13915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palc03019
]
A0T30_13915
03009 Ribosome biogenesis [BR:
palc03009
]
A0T30_13915
Enzymes [BR:
palc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A0T30_13915
Messenger RNA biogenesis [BR:
palc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0T30_13915
Ribosome biogenesis [BR:
palc03009
]
Prokaryotic type
rRNA helicases
A0T30_13915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMR67402
LinkDB
All DBs
Position
complement(3035361..3037058)
Genome browser
AA seq
565 aa
AA seq
DB search
MTQETGTFADLGLHPSILAALTAVGYEEPSPIQAQAIPMILAGHDMIGQAQTGTGKTAAF
ALPILSKIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLK
SLRMGAQIIVATPGRLVDHLSRNDQLLSTIRHLVLDEADEMLKLGFMDDLEVIFQAMPAS
RQSVLFSATLPHSIREIAEKHLREPKHVKIAAKTQTVSRIEQAHLMIHADQKINAVTRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVGEVKLPNPQQVLDARIKKLTTSLTPLTTDAEASHGDLLDRLVADIGCSPRAL
AAALLKKATGGQALDLASVEREQPLVPSAGPARERRERDGDRPERSYDRGDRGEVRERRP
MAAPSEGKARCRTALGARDGIAAKNLLGAILNEGGLQRDAIGRIQIRETFSLIELPEDGL
DRLLGKLKDTRVSGKALKLRRYRED
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgactcaggaaaccggcacttttgccgatctcggccttcatccctccattctcgccgcg
ctgaccgcggtcggatacgaagagccttcccccattcaggcccaggccatcccgatgatc
ctcgccggtcacgacatgatcggccaggcccagaccggtaccggcaagaccgccgccttc
gccctgccgatcctgtccaagatcgacccggccaagcgcgagccgcaggccctgatcctg
gcgccgacccgcgagctggccctgcaggtggccaccgccttcgagacctactccaagcag
atgccgggcgtgaacgtcgtcgccgtctacggcggcgcgcccatgggcccgcagctcaaa
tccctgcgcatgggtgcgcagatcatcgtcgccactccggggcgcctggtcgaccacctg
agccgcaacgatcaactgctgtcgaccatccgccacctggtgctggacgaggccgacgag
atgctcaagctcggcttcatggatgacctggaagtgatcttccaggccatgccggccagc
cgccagagcgtactgttctccgctaccctgccgcactcgatccgcgagatcgccgagaag
cacctgcgcgagcccaagcacgtcaagatcgcggccaagacccagaccgtgtcgcgcatc
gagcaggcgcatctgatgatccacgccgatcagaagatcaacgccgtgacccgcctgctg
gaagtcgaggacttcgacgcgctgatcgccttcgtgcgtaccaagcaggccaccctggac
ctggccgccgcgctggaagccaagggctacaaggccgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgagtcgctgaaagacggtcgcctggacatcgtcgtc
gctaccgacgtggctgcccgtggtatcgacgtgccgcgcatcacccacgtgctcaacgtc
gacatgccgtatgacccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgccctgctgctggtgaccccgcgcgagcgccgcatgctgcaggtgatc
gagcgcgtgaccgggcagaaggtcggcgaggtcaagctgcccaacccgcagcaggtgctg
gacgcccgcatcaagaagctcaccaccagcctaaccccgctgaccaccgatgccgaagcc
agccatggcgacctgctcgatcgtctggttgccgacatcggttgcagcccgcgcgccctg
gccgcggccctgctgaagaaggctaccggtggtcaggctctggacctggccagcgtcgag
cgcgagcagccgctggtgccgagcgccggcccggcccgcgagcgccgtgagcgcgacggc
gaccgcccggagcgttcctacgatcgcggcgatcgcggtgaagtccgcgagcgtcgtccg
atggccgcgccgagtgagggcaaggcccgctgccgtaccgcgctgggtgcgcgtgacggt
atcgcggcgaagaacctgctgggcgccatcctcaacgagggcggcctgcagcgcgacgcc
atcggtcgcatccagatccgcgaaaccttcagcctgatcgagctgccggaagacggcctc
gatcgcctgctcggcaagctgaaggacacccgcgtttccggcaaggccctgaagctgcgt
cgctatcgcgaggactga
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