Pteropus alecto (black flying fox): 102884453
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Entry
102884453 CDS
T02993
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pale
Pteropus alecto (black flying fox)
Pathway
pale03013
Nucleocytoplasmic transport
pale03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pale00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102884453 (UPF1)
03015 mRNA surveillance pathway
102884453 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pale03019
]
102884453 (UPF1)
Enzymes [BR:
pale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102884453 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102884453 (UPF1)
Messenger RNA biogenesis [BR:
pale03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102884453 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102884453 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102884453
NCBI-ProteinID:
XP_006904471
LinkDB
All DBs
Position
Unknown
AA seq
1114 aa
AA seq
DB search
MDKGLEMTENKAAFLELGVVEPAHGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPGGPVGA
GAGVAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACS
YCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECY
NCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVK
IPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQN
IFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICL
RYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQ
SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ
RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL
CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAER
ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC
QLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNG
VTAAERVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAG
AKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA
NEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLN
NLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHD
QLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNR
FGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggataaaggcctggagatgacggagaacaaggcagcattcctggaactgggtgtggtg
gagccagctcatggctccgagtttgagttcaccgacttcactctccccagccagacgcag
acgccccccggcggccccggcggtcctgggggtggcggcccggggggcccggtcggtgca
ggcgcaggagttgcggccggacagctcgacgcgcaggtcggaggacctgaaggcatcctg
cagaatggggccgtggatgacagtgtggccaagaccagccagttgttggccgaattgaac
ttcgaagaagatgaagaggatacttattacacaaaggacctcccagtacatgcctgcagt
tactgtggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaagtggttc
tgtaacggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagggcaaaa
tgcaaagaggtgactttgcacaaagatgggcccctgggggagacggtcctggagtgttac
aattgtggctgccgcaacgtcttcctccttggcttcatccctgctaaggctgactcggtg
gtagtgctgctgtgcaggcagccttgtgccagtcagagcagcctcaaggacatcaactgg
gacagctcgcaatggcagcccctgatccaggaccgctgcttcctgtcttggctggtcaag
atcccttcagagcaggagcagctgcgggctcggcaaataaccgctcagcagatcaacaaa
ctagaggaattgtggaaggagaatccttctgccaccttggaggacctagagaagccgggg
gtggatgaggagccgcagcatgtcctcttgcggtatgaggatgcctaccagtaccagaac
atattcgggcctctggtcaagctggaggccgattatgacaagaagctcaaagagtcccag
actcaagataacatcacagtcaggtgggacctgggccttaacaagaagagaatcgcctac
ttcactttgcccaagactgactctgatatgcggctcatgcagggtgatgagatatgcctg
cgatacaaaggggacctagcacccctgtggaaagggatcggccatgtcatcaaggtccct
gataattacggtgatgagattgccattgagctgcggagcagtgtgggtgcacctgtggag
gtgacgcataacttccaggtggactttgtgtggaaatccacctcgtttgacaggatgcag
agtgcactgaagacctttgctgtggatgagacctccgtgtcaggttatatctaccacaag
ctactcggccacgaagtggaggacgtgatcatcaagtgccagctacccaagcgcttcaca
gcacaggggctccctgacctcaaccactctcaggtttatgctgtaaagactgtgctgcag
agacctctaagcctgatccagggaccaccaggcacggggaagacagtaacctcagccacc
atcgtctaccatctggcacggcagggcaatgggcccgtgcttgtctgtgctccaagtaac
atagctgtggatcagctgacggagaagatccaccaaactgggctgaaagttgtgcggctc
tgcgccaagagccgcgaggccatcgactccccggtgtcattcctagccctgcataaccag
atccggaacatggatagcatgccagagctgcagaagctgcagcagctgaaggatgagact
ggggagctgtcatctgctgatgagaagcggtaccgagccctgaagcgcacggccgaaagg
gagctgctcatgaatgcggatgtcatctgctgtacgtgtgtgggtgcgggggaccccagg
cttgccaagatgcagttccgctccattttaattgacgagagcacccaagccaccgagcca
gagtgcatggtccctgtggtcctcggagccaagcagctgatccttgtgggtgaccactgc
cagctcggccccgtggtgatgtgcaagaaggcggccaaggccgggctgtctcagtcgctg
ttcgaacgcctcgtggtgctgggcatccgtccgatccgcttgcaggtccagtatcggatg
caccctgcgctcagcgcttttccgtccaacatcttctatgagggttctctgcagaatggc
gtcacggcagcggaacgtgtaaagaaagggtttgacttccagtggccccaacctgataag
ccgatgttcttctatgtgacccagggccaggaagagatcgctagttcgggtacctcctac
ctgaacaggacggaggctgcaaacgtggagaagatcaccacgaagctgttaaaggcaggt
gccaagccagaccagattggcatcatcacgccctatgaggggcagcgctcctacttggtg
cagtatatgcagttcagtggctccctgcacaccaagctctaccaggaggtggagattgcc
agtgtggatgcgttccaggggcgcgagaaggacttcatcatcctctcctgcgtgcgggcc
aatgagcaccaaggcattgggtttttaaacgaccccagacggcttaatgtggccctaacc
cgagcgcgatacggggtcatcattgtggggaaccccaaggccctatccaagcagccactc
tggaaccacctgctgaattactacaaggagcagaaggtgctggtggaggggcccctgaac
aacctgcgagagagcctaatgcaattcagcaagccccggaagctggtcaacaccatcaac
cctggagctcgcttcatgaccacagccatgtatgacgcccgggaggccatcatcccagga
tcagtttatgatcggagcagccagggtcggccctcgaacatgtacttccagacccatgac
cagctcggcatgatcagtgctggccccagccacgtggctgccatgaacattcccatcccc
ttcaacctggtcatgccacccatgccacccccggggtattttggacaggctaacgggcca
gctgcaggccggggcaccccaaaaggcaaaacgggtcgtggcggacgccagaagaaccgc
tttgggcttcctgggcccagccagacaaacctgcccagcagccaggccagccaggatgtg
gcatcacagcccttctcacagggtgccctgacgcagggctatatctccatgagccagccc
tcccagatgagccagcctggcctctcccaacctgagctgtcccaggacagttaccttggt
gatgagtttaagtcccagattgatgtggcgctgtcgcaagactccacataccagggagag
cgggcataccagcacggcggagtgacgggcctgtcccagtactag
DBGET
integrated database retrieval system
