Pseudomonas alkylphenolica: PSAKL28_16490
Help
Entry
PSAKL28_16490 CDS
T03238
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
palk
Pseudomonas alkylphenolica
Pathway
palk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSAKL28_16490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palk03400
]
PSAKL28_16490
Enzymes [BR:
palk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSAKL28_16490
DNA repair and recombination proteins [BR:
palk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSAKL28_16490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
AIL60874
UniProt:
A0A077FAN3
LinkDB
All DBs
Position
complement(1816091..1819540)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPHLPATAGKQTWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELRF
FAPELPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPITTALHRLAPT
SFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVESVRLLPAREFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEDTSTLFDYLPQDTQVFSLPGAEQAAEHFWSDVRN
RYEERRIDPSRPLLPPAELFLPVEDCFARLKSWPRVVVSQDDVDSGVGRERFPARTLPNL
AIEAKANQPLAALSGFLDQFSGRVLFTAESAGRREVLLELLERLKLRPQTVDSWNAFVAG
KERLAITIAPLDEGLLLDDPAIALIAESPLFGQRVMQRRRRDKRSDANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSVDYATFSAGFP
FEETPDQQSAIEAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSPKEVAAAVADLAEGKIDIVIGTHKLLQDDV
RIKDLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKSIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGIKKV
DAGPNGGKIEFEAETPVDPLVLIKLIQGQPKRYKFEGATQFKFLVPMERPEERFNNLEAL
FERLTPQSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgcacctgccggccactgccggcaaacaaacctggggcaac
ctgccgggtgccgccctgagcctggcgattgccgaggctgccagcgccgccaagcgcttc
accctgctattgaccgccgacagccagagcgctgaccggcttgagcaggagctgcgtttt
tttgcgccggagctgccggtactgcctttcccagactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcggatcgccagcctgtaccggctgccggaa
cttgatcacggcattctcgtggtgccgatcaccaccgccctgcaccgcctggcaccgacc
agcttcctgctcggtagcagcctggtgctggacatcggccagaagctggatgtcgagcag
atgcgcacgcgccttgaagccagcggctaccgttgtgtcgatacggtgtacgagcatggc
gagttcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcaaactgccgtac
cgcatcgacctgttcgatgacgaaatcgagaccttgcgcaccttcgacccggaaacccag
cgctcgatcgacaaggtcgagtcggtacggctgttgcccgcccgcgagtttccgctgcag
aaagaggcggtgacccgcttcaaggcacgctttcgcgagcgtttcgacgtcgactttcgc
cgttgcccgatcttccaggacctgtccagcggcattaccccggccggtatcgagtactac
ctgccgctgttcttcgaagacacctcgaccctgttcgactacctgccgcaggacacccag
gtgttttccctgccaggcgccgaacaggccgccgagcacttctggagcgatgtgcgcaac
cgctacgaggagcgccgcatcgatccgtcgcggcctttgttgccgccggccgaactgttc
ctgccagtggaagactgctttgcccggctaaaaagctggccgcgggtggtcgtcagccag
gatgacgtcgacagcggcgtcggccgcgagcgcttcccggcccggaccttgccgaacctg
gccatcgaagccaaagccaaccagcccctggcagcactgtcgggctttctcgaccagttt
tctggccgcgtgctgttcaccgccgagtcggcgggccgtcgcgaagtactgctggagctg
ctcgaacgcctgaagctgcgcccgcaaaccgtcgatagctggaacgccttcgtcgcgggc
aaagagcgcctggcaatcaccatcgcgccgctggacgaaggtctgctgctggatgacccg
gccatcgccctgatcgccgagagcccgctgttcggtcagcgggtcatgcagcgccgacgc
cgcgacaaacgcagcgacgccaacaacgacgcggtgatcaagaaccttaccgagctgcgc
gaaggcgcgccggtggtgcatatcgatcacggcgtgggccgctacctgggtctggcaacc
ctggaaatcgacaaccaggccgccgaattcctcaccctcgaatacgccgagggtgccaag
ctctacgtgccggtggccaacctgcacctgatcgctcgctacaccggcagcgacgacgcc
ctggcgccgttgcaccgcctgggttccgaagcctggcagaaagccaagcgcaaggccgcc
gagcaggtacgcgatgtggccgccgaactgctcgacatctatgcccggcgcgcggcgcgc
aaaggttatgccttcgccgacccgtcagtggactacgccaccttcagcgccggctttccg
ttcgaagaaaccccggaccaacagagcgccatcgaagcggtgcgcgaagacatgctggcg
gccaaaccgatggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgtgccgccttcattgccgtgcacggcgggcgtcaggtcgccattctggtaccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtcgaagtgatgagccgcttcaagtcacccaaagaggtcgccgccgccgttgccgat
ctggccgaaggcaagatcgacatcgtcatcggcacccacaagctgctgcaggacgacgtc
aggatcaaggacctgggcctggtgatcatcgacgaagagcaccgttttggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaggtggacatcctcaccctgactgccacgccg
atcccgcgcaccctgaacatggctgtggccggcatgcgcgacctgtcgatcatcgccacc
ccgccggcacgccggttgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaggaagccttgctgcgtgagctgctgcgcggtggccaggtctattacctgcacaacgac
gtgaagagcatcgaaaaatgcgccgccgacctcgccgagctggtaccagaagccaggatc
ggtatcggccacgggcagatgcgcgagcgtgaactagaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgattgcctcgaccatcatcgagaccggcatcgatgtgccc
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccaactgcatcaa
ctgcgcggccgggtcggccgtagccaccaccaggcctacgcctacctgcttacgccgccg
cgccagcagatcaccccggacgccgaaaagcgtctggaagcgatcgccaatacccaggac
ctgggcgccggtttcgtcctggccactaacgacctggagatccgcggcgccggtgaactg
ctcggcgaaggccagagcggccagatccaggcggtcggtttcaccctgtacatggaaatg
ctcgagcgtgcggtcaaggccatccgcaagggcacccagccgaacctcgatcagccgctg
ggtggcggcccggaaatcaacctgcgcctaccggcactgattcccgaagactacctgccg
gacgtccacgcccgcctgatcctgtacaagcgcatcgcctcggcggcggacgaagacggc
ctcaaggacctgcaggtcgagatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctggtgcgcctgaccctgctcaagctgcaggcggaaaaactcggcatcaagaaagtc
gatgccggccccaacggcggcaagatcgagttcgaagccgagactccggtcgacccgctg
gtattgatcaagctgatccagggtcagcccaagcgctacaagttcgaaggcgccacccag
ttcaaattcctggtaccgatggagcgcccggaagaacgtttcaacaacctcgaagcgctg
ttcgagcgcctgaccccacaatctgcgtga
DBGET
integrated database retrieval system
