Pseudomonas alcaliphila: UYA_08275
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Entry
UYA_08275 CDS
T06680
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pall
Pseudomonas alcaliphila
Pathway
pall03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UYA_08275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pall03400
]
UYA_08275
Enzymes [BR:
pall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UYA_08275
DNA repair and recombination proteins [BR:
pall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UYA_08275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
APU29724
UniProt:
A0A1L7FY10
LinkDB
All DBs
Position
complement(1800979..1804416)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQQWGNLPGAALSLTIAEAASNAGRFTLVLTEGSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYRLPQLSRGILVVPITTALHRLAPK
RFLLGGSLVLDVGQKLDVEQMRGRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDTPY
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFFDETDTLFDYLPGDTQVFSLPGIEKAAEHFWTDARS
RYEDRRVDPERPLLPPADIFLPVEDCFARLKSWPRVVVNQDDIEPGVGQTRFDARALPDL
AIQAKAGEPLAALRRFIEEYPGRVLFCAESAGRREVLLELLARLKLKPREVEGWPAFVAS
PERLNICIAPLDEGLLLDDLALIAESPLFGQRVMQRRRREKGREGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLVTMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPALDYATFSAGFPFEE
TPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVGEAVQQLAEGKVDIVIGTHKLLQDDVKFH
NLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMESNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCASELAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIDRADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIAGAQDLGAGFVLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
SRLILYKRIANASDEDGLKELQVEMIDRFGLLPEPTKNLMRLTLLKLQADKLGISKVDAG
PQGGRIEFAAETCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALLER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctaccggccagcgccggcaaacaacagtggggcaac
ctgcccggcgccgcgctgtccctgactatcgccgaagcggccagcaatgccggacgcttc
acgctggtgctcaccgaaggcagccagagcgccgagcgcctgcaggaagaactggcgttc
ttcgcccccgacctgccagtgctgcactttcccgactgggaaaccctgccctacgatgtc
ttctcgccacaccaggacatcatctcgcaacgcatcgcagcgctctatcgcctgccgcag
ctgagccgcggcatcctcgtagtgccgatcaccaccgccctacaccgcctggcaccgaag
cgcttcctgctgggtggcagcctggtgctggatgtcggccagaaactcgatgtggagcag
atgcgcggccgcttggaggccgctggctaccgctgcgtcgacaccgtttacgaacacggc
gagttcgccgtgcgcggcgcattgatcgacctgttcccgatgggcagtgacacgccctac
cgtatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgaccccgagacccag
cgctcggtggacaaggtcgagtcgatccgtctgttgccggcgcgtgaatttccgctggaa
aagaaggctgtcaccgatttccgcgggcgtttccgcgagcgcttcgacgtggatttccgt
cgctgcccgatctatcaggacctttccaccggcatcacccccgccggcatcgagtactac
ctgccgctgttcttcgatgagacagacaccctgttcgactacctgccaggcgacacccag
gtgttctccctgcccggcatcgaaaaggctgccgagcatttctggacagatgcgcgtagc
cgctatgaggaccgccgagtcgacccggagcgcccgctgctgccacccgccgacatcttc
ctgccggtcgaggactgcttcgcccgcctgaagagctggccgcgagtagtggtcaatcag
gacgatatcgagcccggcgtcggccagacccgttttgacgcacgcgccctgcccgacctg
gcgattcaggccaaggccggcgagccgctggcggcgttgcgccgctttatcgaagaatat
ccaggccgcgtgctgttctgcgccgaatcagccggtcgccgcgaagtgctgctggaactg
ctcgcccgcctcaagctcaagccccgggaagtcgagggctggccggccttcgtcgccagc
cctgaacgcctcaacatctgcatcgcaccactggatgaaggcctgctgctcgacgacctg
gcactgatcgccgaaagcccgctgttcggccagcgcgtgatgcagcgtcgccgccgcgaa
aaaggccgagaaggcggcgacaacgtgatcaagaacctcaccgagctgcgcgaaggcgcg
ccggtggtgcatatcgatcacggcgtcggccgctacctgggcctggtgaccatggagttc
gacggccaggccgccgaattcctcgccctgcaatatgccgacgaagccaagctttatgtc
cccgtggccagccttcatctgatcgcccgctacaccggcagtgacgatgccctggcgccg
ctgcatcgcctcggctcggaggtctggcagaaggccaagcgcaaggcggccgaacaggtg
cgcgatgttgccgccgagctgctcgacatctacgcccgccgcgccgctcgtgaaggcttc
gccttccaggacccggcactggactacgccaccttcagcgccggtttccccttcgaggaa
accccggaccagcaggccgccatcgatgccgtgcgcgccgacatgctggccggcaagccg
atggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggccatgcgcgcc
gccttcatcgccgtgcacagcggcaagcaggtcgccgtgctggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcggcgaggccgtgcagcaactggccgaa
ggcaaggtggatatcgtcatcggcacgcacaagctgctgcaggacgacgtcaagttccac
aacctcggcctggccatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaacag
ctcaaggccctgcgcagcgaggtcgacatcctcaccctgactgccacgccgatcccgcgc
acgctgaacatggccgtggccggcatgcgcgacctgtcgatcatcgccacgccaccagcg
cggcgtctgtcggtgcgcaccttcgtcatggaaagcaacaagccgaccatcaaggaagcg
ctgctgcgcgagctgctgcgcggtggccaggtctactacctgcacaacgatgtaaagacc
atcgagaaatgcgccagtgagctggcggagctggtgcccgaggcgcgtatcggcatcggc
cacgggcagatgcgcgaacgcgatctcgagcaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgagaccggtatcgacgtgcctagcgccaac
accatcatcatcgaccgcgccgacaagttcggcctggcccagctgcaccagttgcgcggc
cgtgtcggtcgtagccaccaccaggcctacgcctacctgctcacgccaccgcgcaagcag
atgaccccggatgcggaaaaacgcctggaggccatcgcgggcgctcaggatctcggcgcc
ggcttcgtcctcgctacccatgacctggaaatccgcggcgctggcgaactgcttggcgac
ggccagagcgggcagattcaggcggtcggcttcaccctctacatggaaatgctcgaacgc
gcggtcaaggctatccagaaaggcgagcagccgaacctcgaccagccattgggcggcggc
ccggagatcaacctgcgcgtaccggcgctgatccccgaggactacctgcccgatgtgcac
agccgcctgatcctctacaaacgcatcgccaacgccagcgacgaggacggtctgaaggag
cttcaggtagagatgatcgaccgtttcggcctgctgccggagccgaccaagaacctcatg
cgcctgaccctgctcaagctgcaggccgacaagctcggcatcagcaaggtcgacgccggc
ccgcagggtggacgaatcgagttcgctgcggaaacctgcgttgacccgctgaccctgatc
aaactgatccaggcccagccaaaacgctacaagttcgaaggcgccaccgtcttcaagatc
caggtgccgatggagcgtgcggaagaacgcttcaacaccctggaagccctgctcgagcgc
ctcgcgcccaccacctga
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