KEGG   Pseudomonas alcaliphila: UYA_12525
Entry
UYA_12525         CDS       T06680                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pall  Pseudomonas alcaliphila
Pathway
pall03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pall00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    UYA_12525 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pall03400]
    UYA_12525 (ligD)
Enzymes [BR:pall01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     UYA_12525 (ligD)
DNA repair and recombination proteins [BR:pall03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     UYA_12525 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: APU30508
UniProt: A0A1L7G090
LinkDB
Position
complement(2724839..2727370)
AA seq 843 aa
MARTQSEYSRKRNFEQTSEPRERPHKRGRKAGALRFVIQKHDARRLHYDFRLELDGTLKS
WAVPKGPSLDPRDKRLAVHVEDHPLDYADFEGSIPEGSYGAGDVIVWDHGIWQPHGDPSA
AYVAGKLKFSLVGEKLAGDWTLVRTRLRGSGDKEQWLLIKERDDAACSSNDYYILDALPQ
SVISGALVGGPSKPGKTTKHEAAARSKANTSSSTRFPDLLAPQLATLVDGPPEGDWRYEV
KYDGYRILARIRDDEVRLFTRNGHDWTGRLPMQAKALAKLGLHDSWLDGEVVALNEQGLP
DFQQLQNAFDIGRSHDLIYYLFDAPFLNGEDLRQTPLEQRRARLRALLGRTRSSPLRFSA
DFNVDHQSILDSACAMSLEGVIGKRAGSTYVSRRSADWIKLKCRLRQEFVIVGHTAPKGS
RTGFGALLLAVNEESGLRYAGRVGTGFSEAALKALMQRLQTLACTESPLSKRLTAALTRG
VRWVEPKLVCEVEFAEWTREGIVRQASFIALRNDKPAVQIVRERPKAAAAEDRKPDKSTA
TRHTTAGNPVVGGVPISNPQRVIDPQSGTTKLQVAQFYERIGEWLLPHLDNRPVSLVRAP
DGVGGEQFFQKHAERLAIPNIRHLDPKLDPGHARLMEIDSLSALVGAAQMGCIELHTWGA
TSERIETPDRFVLDLDPDPALPWRSMLEATRLTLAVLDELGLDAFLKTSGGKGIHIVVPL
ARRADWDTVKAFAKAISQFMTRQLPERFTATSGPKNRVGKIFIDYLRNGRGASTVAAYSL
RARPGLPVSVPIARDELDGLRSAQQWTIANLVQRLDALQASPWRGYSNRQRLTQAMWDRL
GIV
NT seq 2532 nt   +upstreamnt  +downstreamnt
atggccagaacccagagcgagtacagccgcaaacgcaacttcgagcagaccagcgagccc
cgcgaacgaccgcacaagcgcgggcgcaaggccggtgccctgcgtttcgtgatccagaaa
cacgatgcccggcggttgcactacgattttcgcctggagctggatggcacgctgaagagc
tgggcggtgcccaaggggccgagcctggacccacgcgacaagcgcctggccgtgcatgtg
gaagatcatccgctggattatgccgatttcgaaggcagcatccccgagggcagctatggg
gcgggagacgtgattgtctgggatcacggcatctggcagccgcatggcgatccttctgcc
gcctatgtcgccggcaagctcaagttcagcctggtcggcgaaaagctggccggcgactgg
acgttggttcgcacccgtctgcgcggtagcggtgacaaggagcagtggctgctgatcaag
gaacgtgacgacgcagcgtgctccagcaatgattactacattctcgacgccttgccgcag
agcgtgatcagcggcgcgctggtgggtggcccgagcaagcccggcaaaaccaccaaacac
gaggctgctgcgaggtcgaaggcgaacacatcgtcctcgaccaggtttcccgacctcctg
gcgccgcagctggccactctggtggatgggccccctgagggtgactggcgctacgaggtg
aagtacgacggctaccgcatcctggcgcgaatccgggacgacgaggtgcgcttgttcacc
cgtaacggccatgactggacagggcgtctgcccatgcaggccaaggccctggccaagctc
ggcctgcatgacagctggctggatggcgaagtggtcgcactcaacgaacaggggctgccg
gatttccagcagttgcagaacgccttcgacatcggccgtagccatgatctgatctactat
ctgttcgacgctccctttcttaacggcgaagacctgcgccagacgcctcttgagcaacgc
cgagcccggctcagggcgctcctcgggcgcacgcgcagcagtccgctgcgcttctccgcc
gacttcaacgtcgatcatcagagcattctcgacagcgcctgcgcgatgtcgctggaaggg
gtgatcggcaagcgtgccggcagcacctatgtctcacgccgcagtgcggattggatcaag
ctcaagtgccgcctgcgccaggagttcgtcatcgtcggtcacacggctccgaagggcagc
cgtaccggctttggcgcgttactgctggcggtgaacgaggagagcggtctgcgttatgcc
ggacgggtcggtaccgggttcagcgaggcagcgctcaaggcgttgatgcaacgcctacag
acgttggcgtgtaccgaatcgcccttatcgaaaagactcacggcagcgctgacccgcggc
gtaaggtgggtcgagccgaaactggtgtgcgaggtggagttcgccgaatggacgcgcgag
gggatcgtgcgccaggccagcttcatcgcgctgcgcaatgacaagccggccgtgcagatt
gttcgcgagcgcccaaaggcggctgcggccgaagacagaaaaccggacaaatctaccgct
acccgccacacgacagccggtaatccagtagtgggcggcgtaccgatcagcaatccgcag
cgggtgatcgacccgcaaagcggtaccaccaagctgcaggtggcgcagttctacgaacgc
atcggcgaatggctactaccgcacctggacaatcgcccggtttcactggtgcgagcgccc
gatggcgtcgggggcgagcagttcttccaaaagcacgccgagcgtttggcgatacccaac
atcaggcacctggatccgaagctcgatcccgggcatgcccggttgatggaaatcgacagc
ctgtcagcgctggtcggggctgcgcagatgggctgtattgaattgcatacctggggcgcc
accagcgaacgtatcgaaacgcccgaccgcttcgtactcgaccttgatccggacccggcg
ctgccctggcgtagcatgctggaagcgacgcgcctgaccctggcggttctggatgaactg
ggcctggatgccttcctgaagaccagcggcggcaagggcattcacattgtcgtgccgctg
gcccggcgcgccgactgggatacggtcaaggctttcgccaaggccatctcccagttcatg
actcgccagttgccggagcgcttcaccgccacatccgggccgaagaaccgggttggcaag
atcttcatcgactacctgcgcaacggacggggcgccagcacggtggcggcctattccttg
cgtgcacggccggggcttccggtttcggtgccgattgcccgcgacgaactggacggtctg
cgtagtgcccagcaatggacaatcgccaatcttgtgcagcgcctggatgcgttgcaggcg
tctccttggcgcggctattccaatcgacaacgcttgacccaagccatgtgggacaggctt
gggatcgtctaa

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