Pseudomonas alcaliphila: UYA_12525
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Entry
UYA_12525 CDS
T06680
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pall
Pseudomonas alcaliphila
Pathway
pall03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UYA_12525 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pall03400
]
UYA_12525 (ligD)
Enzymes [BR:
pall01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UYA_12525 (ligD)
DNA repair and recombination proteins [BR:
pall03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UYA_12525 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APU30508
UniProt:
A0A1L7G090
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Position
complement(2724839..2727370)
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AA seq
843 aa
AA seq
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MARTQSEYSRKRNFEQTSEPRERPHKRGRKAGALRFVIQKHDARRLHYDFRLELDGTLKS
WAVPKGPSLDPRDKRLAVHVEDHPLDYADFEGSIPEGSYGAGDVIVWDHGIWQPHGDPSA
AYVAGKLKFSLVGEKLAGDWTLVRTRLRGSGDKEQWLLIKERDDAACSSNDYYILDALPQ
SVISGALVGGPSKPGKTTKHEAAARSKANTSSSTRFPDLLAPQLATLVDGPPEGDWRYEV
KYDGYRILARIRDDEVRLFTRNGHDWTGRLPMQAKALAKLGLHDSWLDGEVVALNEQGLP
DFQQLQNAFDIGRSHDLIYYLFDAPFLNGEDLRQTPLEQRRARLRALLGRTRSSPLRFSA
DFNVDHQSILDSACAMSLEGVIGKRAGSTYVSRRSADWIKLKCRLRQEFVIVGHTAPKGS
RTGFGALLLAVNEESGLRYAGRVGTGFSEAALKALMQRLQTLACTESPLSKRLTAALTRG
VRWVEPKLVCEVEFAEWTREGIVRQASFIALRNDKPAVQIVRERPKAAAAEDRKPDKSTA
TRHTTAGNPVVGGVPISNPQRVIDPQSGTTKLQVAQFYERIGEWLLPHLDNRPVSLVRAP
DGVGGEQFFQKHAERLAIPNIRHLDPKLDPGHARLMEIDSLSALVGAAQMGCIELHTWGA
TSERIETPDRFVLDLDPDPALPWRSMLEATRLTLAVLDELGLDAFLKTSGGKGIHIVVPL
ARRADWDTVKAFAKAISQFMTRQLPERFTATSGPKNRVGKIFIDYLRNGRGASTVAAYSL
RARPGLPVSVPIARDELDGLRSAQQWTIANLVQRLDALQASPWRGYSNRQRLTQAMWDRL
GIV
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggccagaacccagagcgagtacagccgcaaacgcaacttcgagcagaccagcgagccc
cgcgaacgaccgcacaagcgcgggcgcaaggccggtgccctgcgtttcgtgatccagaaa
cacgatgcccggcggttgcactacgattttcgcctggagctggatggcacgctgaagagc
tgggcggtgcccaaggggccgagcctggacccacgcgacaagcgcctggccgtgcatgtg
gaagatcatccgctggattatgccgatttcgaaggcagcatccccgagggcagctatggg
gcgggagacgtgattgtctgggatcacggcatctggcagccgcatggcgatccttctgcc
gcctatgtcgccggcaagctcaagttcagcctggtcggcgaaaagctggccggcgactgg
acgttggttcgcacccgtctgcgcggtagcggtgacaaggagcagtggctgctgatcaag
gaacgtgacgacgcagcgtgctccagcaatgattactacattctcgacgccttgccgcag
agcgtgatcagcggcgcgctggtgggtggcccgagcaagcccggcaaaaccaccaaacac
gaggctgctgcgaggtcgaaggcgaacacatcgtcctcgaccaggtttcccgacctcctg
gcgccgcagctggccactctggtggatgggccccctgagggtgactggcgctacgaggtg
aagtacgacggctaccgcatcctggcgcgaatccgggacgacgaggtgcgcttgttcacc
cgtaacggccatgactggacagggcgtctgcccatgcaggccaaggccctggccaagctc
ggcctgcatgacagctggctggatggcgaagtggtcgcactcaacgaacaggggctgccg
gatttccagcagttgcagaacgccttcgacatcggccgtagccatgatctgatctactat
ctgttcgacgctccctttcttaacggcgaagacctgcgccagacgcctcttgagcaacgc
cgagcccggctcagggcgctcctcgggcgcacgcgcagcagtccgctgcgcttctccgcc
gacttcaacgtcgatcatcagagcattctcgacagcgcctgcgcgatgtcgctggaaggg
gtgatcggcaagcgtgccggcagcacctatgtctcacgccgcagtgcggattggatcaag
ctcaagtgccgcctgcgccaggagttcgtcatcgtcggtcacacggctccgaagggcagc
cgtaccggctttggcgcgttactgctggcggtgaacgaggagagcggtctgcgttatgcc
ggacgggtcggtaccgggttcagcgaggcagcgctcaaggcgttgatgcaacgcctacag
acgttggcgtgtaccgaatcgcccttatcgaaaagactcacggcagcgctgacccgcggc
gtaaggtgggtcgagccgaaactggtgtgcgaggtggagttcgccgaatggacgcgcgag
gggatcgtgcgccaggccagcttcatcgcgctgcgcaatgacaagccggccgtgcagatt
gttcgcgagcgcccaaaggcggctgcggccgaagacagaaaaccggacaaatctaccgct
acccgccacacgacagccggtaatccagtagtgggcggcgtaccgatcagcaatccgcag
cgggtgatcgacccgcaaagcggtaccaccaagctgcaggtggcgcagttctacgaacgc
atcggcgaatggctactaccgcacctggacaatcgcccggtttcactggtgcgagcgccc
gatggcgtcgggggcgagcagttcttccaaaagcacgccgagcgtttggcgatacccaac
atcaggcacctggatccgaagctcgatcccgggcatgcccggttgatggaaatcgacagc
ctgtcagcgctggtcggggctgcgcagatgggctgtattgaattgcatacctggggcgcc
accagcgaacgtatcgaaacgcccgaccgcttcgtactcgaccttgatccggacccggcg
ctgccctggcgtagcatgctggaagcgacgcgcctgaccctggcggttctggatgaactg
ggcctggatgccttcctgaagaccagcggcggcaagggcattcacattgtcgtgccgctg
gcccggcgcgccgactgggatacggtcaaggctttcgccaaggccatctcccagttcatg
actcgccagttgccggagcgcttcaccgccacatccgggccgaagaaccgggttggcaag
atcttcatcgactacctgcgcaacggacggggcgccagcacggtggcggcctattccttg
cgtgcacggccggggcttccggtttcggtgccgattgcccgcgacgaactggacggtctg
cgtagtgcccagcaatggacaatcgccaatcttgtgcagcgcctggatgcgttgcaggcg
tctccttggcgcggctattccaatcgacaacgcttgacccaagccatgtgggacaggctt
gggatcgtctaa
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