Paludicola sp. MB14-C6: RBG61_11750
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Entry
RBG61_11750 CDS
T09321
Name
(GenBank) RNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
palm
Paludicola sp. MB14-C6
Pathway
palm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RBG61_11750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palm03400
]
RBG61_11750
Enzymes [BR:
palm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RBG61_11750
DNA repair and recombination proteins [BR:
palm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RBG61_11750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WMJ22656
UniProt:
A0AA51CM82
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All DBs
Position
2463084..2464010
Genome browser
AA seq
308 aa
AA seq
DB search
MDLFESRNIKPMLIAENVEPFNSHEHIFELKLDGSRCIAYLDKDEVDLRNKRNVKLIPKF
PELSNINKQIKKRCILDGELIVMVEGKPNFYELQRRTLMSNKFKIELAYKQHPACFIAYD
ILYLEDRQITDLPLIERKKLLAKTVKENEQIAISRYIEYNGIDLYKLTELQELEGIVAKL
KDSKYYFGKRTHDWVKIKWLLDDDFAVCGYIEKDNNMTSIVLGQYKNDELVYKGHVTLGV
RKSDLIKKGKAIESSPFSTIPQGNEEAIWLEPNLVCTVQWMPRQNKGMNQSVFKGFRDDK
TPKECIVK
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggatttattcgagtctcggaatataaagccaatgttgattgcagagaatgttgaacca
tttaattcacatgaacacatatttgagctaaagcttgatgggagtcgatgcattgcatat
ctagataaagatgaagttgatttaagaaataaaagaaatgttaagttgattcctaaattt
cctgagttgtcgaacatcaacaagcaaataaaaaaacgctgcattctagatggtgagtta
attgtaatggttgaaggaaaacctaacttttatgaattacaaaggcgtaccttaatgtcg
aataagtttaaaattgagttagcttataaacaacacccagcgtgttttatagcttacgat
attttgtatttagaggatcggcaaataacagatttaccattgatagagcgtaaaaaatta
cttgctaaaactgtaaaagaaaatgaacagattgcaatttcaaggtatatcgaatataac
ggcattgatttatataaactaactgaactgcaagagcttgagggtatagtagctaaatta
aaggatagtaaatattattttggaaagaggactcatgattgggttaaaataaaatggcta
ttagacgatgactttgcggtttgtggttacatcgaaaaagataacaatatgacaagtatt
gttttggggcaatataaaaatgatgaattggtatataaggggcatgttactttaggtgta
agaaaatctgatttaattaaaaaaggaaaggctatagagtcctcacctttttcaaccatt
ccacaaggtaatgaagaagcaatatggcttgaacctaatttggtttgtactgtacaatgg
atgccacgacaaaataaaggtatgaatcaatcagtttttaaaggctttagagatgataaa
actccgaaggaatgtatagtaaaataa
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