Pseudoalteromonas aliena: B0W48_19590
Help
Entry
B0W48_19590 CDS
T04815
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paln
Pseudoalteromonas aliena
Pathway
paln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0W48_19590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paln03019
]
B0W48_19590
03009 Ribosome biogenesis [BR:
paln03009
]
B0W48_19590
Enzymes [BR:
paln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B0W48_19590
Messenger RNA biogenesis [BR:
paln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0W48_19590
Ribosome biogenesis [BR:
paln03009
]
Prokaryotic type
rRNA helicases
B0W48_19590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQQ01782
UniProt:
A0A1Q2H359
LinkDB
All DBs
Position
4396822..4398672
Genome browser
AA seq
616 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSA
LRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKIVEEKRIEALQAKLTIALENKDITFFNDVATNMAEKLDLPLESLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRNDRNDRGDRGRRNERGGERGGERAER
KPRERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTVQL
PQNMPKDVLDHFQKVFICKRPMGLTITQDQGPAEPRGERSERPAGDKRSFNKDESARGDK
RSGPRKERRPVSFTAK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttgaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagctcaaacgggtacaggtaaaaccgcagcatttgca
ctgccattacttaataatattgacccgtctgtgaagcagccacagatccttgtactcaca
ccaacacgtgagcttgcgatccaagtagctgaggcattcgaacaatatgctaaacatgtt
cgtggtattgaagtattggcactatatggtggccaaagctacagtatccaattaagcgca
cttcgtcgtggcgctcaggttattgttgcaactccaggtcgtttaatcgatcacattaac
cgtggcactatcaagtttgatgctctacaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgtagaaagcatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgactatgcctaagcaaattcaaaacatcagcagcaaatat
atgaacaatcctgaacaggttcatatttctgcacgtaactcgacagtatcatctgttgag
caagtgttttggaatgcaagcgtacataaaaataaagcaattgttcgcttcttagaagct
gagcaatatgaaggtgctattgttttcgttcgtacacgtaacgatacagtacaacttgct
gagttattagagcgcgaaggtttctctgctgctccacttaacggtgacatgaaccagcaa
gcacgtgaacgcactgtagatcgtttaaaaagtggcatgctaaacattgttattgcaaca
gatgtagctgcacgtggtctagatgttgaccgtttaagcttagttatcaactacgatatt
ccacaagattctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcaattttattcgtaaaacataacgaacgttatttacttaaaaatatcattcgt
catacgaagtctgaaattgcacaagttgaattaccaactgcaaaaattgttgaagaaaaa
cgtatcgaagcgttacaagcaaaattaactattgcgcttgaaaacaaagacattacattc
ttcaatgatgtagctactaacatggctgaaaaacttgaccttcctcttgaaagcttagcg
ggtgcgttactgtgtttagcacagcaacagtcgccaattaaagttgaagaagttaagatt
caacctcgtgaacgtaacgagcgtaacgaccgcaatccacgtaatgaccgcaacgatcgc
ggtgaccgtggacgtcgtaacgagcgtggcggcgaacgtggtggtgaacgcgctgagcgt
aaacctcgcgaacgtaacagccgtgatgcaggccctatggatacgtaccgtatcgaagta
ggtcgtgaacatggtgttcaggttaaaaacattgttggcgctatcgctaacgaagctgac
atctcaagcaagtttattggtgatattcgtttacacgacaatcacagtacggttcaatta
ccgcaaaacatgcctaaagatgtacttgatcatttccaaaaagtgtttatttgtaaacgt
cctatgggcttaacaatcacacaagatcaaggccctgctgaaccacgcggcgaacgctct
gagcgcccagctggtgataaacgcagctttaataaagacgagagtgcacgcggtgataag
cgcagcggtcctcgtaaagaacgtcgcccagtaagcttcacagctaaatag
DBGET
integrated database retrieval system
